Browsing by Author "Chatterton J"

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    Influence of management practice on the microbiota of a critically endangered species: a longitudinal study of kākāpō chick faeces and associated nest litter
    (BioMed Central, Ltd., 2022-09-30) West AG; Digby A; Lear G; Armstrong D; Armstrong-James D; Bromley M; Buckley E; Chatterton J; Cox MP; Cramer RA; Crane J; Dearden PK; Eason D; Fisher MC; Gago S; Gartrell B; Gemmell NJ; Glare TR; Guhlin J; Howard J; Lacap-Bugler D; Le Lec M; Lin XX; Lofgren L; Mackay J; Meis J; Morelli KA; Perrott J; Petterson M; Quinones-Mateu M; Rhodes J; Roberts J; Stajich J; Taylor MW; Tebbutt SJ; Truter-Meyer A; Uddstrom L; Urban L; van Rhijn N; Vercoe D; Vesely E; Weir BS; Winter DJ; Yeung J
    Background: The critically endangered kākāpō is a flightless, nocturnal parrot endemic to Aotearoa New Zealand. Recent efforts to describe the gastrointestinal microbial community of this threatened herbivore revealed a low-diversity microbiota that is often dominated by Escherichia-Shigella bacteria. Given the importance of associated microbial communities to animal health, and increasing appreciation of their potential relevance to threatened species conservation, we sought to better understand the development of this unusual gut microbiota profile. To this end, we conducted a longitudinal analysis of faecal material collected from kākāpō chicks during the 2019 breeding season, in addition to associated nest litter material. Results: Using an experimental approach rarely seen in studies of threatened species microbiota, we evaluated the impact of a regular conservation practice on the developing kākāpō microbiota, namely the removal of faecal material from nests. Artificially removing chick faeces from nests had negligible impact on bacterial community diversity for either chicks or nests (p > 0.05). However, the gut microbiota did change significantly over time as chick age increased (p < 0.01), with an increasing relative abundance of Escherichia-Shigella coli over the study period and similar observations for the associated nest litter microbiota (p < 0.01). Supplementary feeding substantially altered gut bacterial diversity of kākāpō chicks (p < 0.01), characterised by a significant increase in Lactobacillus bacteria. Conclusions: Overall, chick age and hand rearing conditions had the most marked impact on faecal bacterial communities. Similarly, the surrounding nest litter microbiota changed significantly over time since a kākāpō chick was first placed in the nest, though we found no evidence that removal of faecal material influenced the bacterial communities of either litter or faecal samples. Taken together, these observations will inform ongoing conservation and management of this most enigmatic of bird species.
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    What's in a database? Insights from a retrospective review of penguin necropsy records in Aotearoa New Zealand
    (PLOS, 2025-04-30) Saverimuttu S; Hunter S; Gartrell B; McInnes K; Warren K; Pas A; Chatterton J; Yeap L; Jackson B; Raverty S
    Wildlife necropsy databases often provide data for morbidity and mortality studies of free-ranging species, with implicit relevance for conservation goals, as well as domestic animal and human health. Retrospective reviews are a common way to derive insights from such opportunistic data, despite the methodological difficulties of performing these analyses, alongside findings being prone to bias. This study reviews morbidity and mortality data from Sphenisciformes of Aotearoa New Zealand, using records extracted and manually refined from submissions to the national Wildbase Pathology Register. The review corroborates the broader consensus that hoiho (yellow eyed penguin, Megadyptes antipodes) are most commonly diagnosed with infectious/inflammatory disease (43.1%, 422/978 diagnoses), kororā (blue penguin, Eudyptula minor) with traumatic injuries (42.9%, 156/364 diagnoses), and emaciation being a common finding across both species (33.9%, 393/1463 diagnoses). Further, there are marked spatiotemporal trends in submissions, driven primarily by the affected species and the submitting organisations, highlighting the biases within such databases that must be factored into the application of results. Typographical errors, redundancies from synonymous terms, and missing data are captured as barriers to performing manual reviews of free-text data. Overall, this study highlights strengths and limitations of storage and review of wildlife necropsy data while providing insight into threats faced by the penguins of Aotearoa.