Browsing by Author "Chen L"
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- ItemAnalytical Investigations into Anomalous Diffusion Driven by Stress Redistribution Events: Consequences of Lévy Flights(MDPI (Basel, Switzerland), 2022-09-06) Cleland JD; Williams MAK; Lopes AM; Alfi A; Chen L; David SAThis research is concerned with developing a generalised diffusion equation capable of describing diffusion processes driven by underlying stress-redistributing type events. The work utilises the development of an appropriate continuous time random walk framework as a foundation to consider a new generalised diffusion equation. While previous work has explored the resulting generalised diffusion equation for jump-timings motivated by stick-slip physics, here non-Gaussian probability distributions of the jump displacements are also considered, specifically Lévy flights. This work illuminates several features of the analytic solution to such a generalised diffusion equation using several known properties of the Fox H function. Specifically demonstrated are the temporal behaviour of the resulting position probability density function, and its normalisation. The reduction of the proposed form to expected known solutions upon the insertion of simplifying parameter values, as well as a demonstration of asymptotic behaviours, is undertaken to add confidence to the validity of this equation. This work describes the analytical solution of such a generalised diffusion equation for the first time, and additionally demonstrates the capacity of the Fox H function and its properties in solving and studying generalised Fokker–Planck equations.
- ItemThe LONELY GUY gene family: from mosses to wheat, the key to the formation of active cytokinins in plants(John Wiley and Sons Ltd on behalf of the Society for Experimental Biology and The Association of Applied Biologists, 2022-04-07) Chen L; Jameson GB; Guo Y; Song J; Jameson PELONELY GUY (LOG) was first identified in a screen of rice mutants with defects in meristem maintenance. In plants, LOG codes for cytokinin riboside 5'-monophosphate phosphoribohydrolase, which converts inactive cytokinin nucleotides directly to the active free bases. Many enzymes with the PGGxGTxxE motif have been misannotated as lysine decarboxylases; conversely not all enzymes containing this motif are cytokinin-specific LOGs. As LOG mutants clearly impact yield in rice, we investigated the LOG gene family in bread wheat. By interrogating the wheat (Triticum aestivum) genome database, we show that wheat has multiple LOGs. The close alignment of TaLOG1, TaLOG2 and TaLOG6 with the X-ray structures of two functional Arabidopsis thaliana LOGs allows us to infer that the wheat LOGs 1-11 are functional LOGs. Using RNA-seq data sets, we assessed TaLOG expression across 70 tissue types, their responses to various stressors, the pattern of cis-regulatory elements (CREs) and intron/exon patterns. TaLOG gene family members are expressed variously across tissue types. When the TaLOG CREs are compared with those of the cytokinin dehydrogenases (CKX) and glucosyltransferases (CGT), there is close alignment of CREs between TaLOGs and TaCKXs reflecting the key role of CKX in maintaining cytokinin homeostasis. However, we suggest that the main homeostatic mechanism controlling cytokinin levels in response to biotic and abiotic challenge resides in the CGTs, rather than LOG or CKX. However, LOG transgenics and identified mutants in rice variously impact yield, providing interesting avenues for investigation in wheat.