Massey Research Online - Browsing by Author "Sofkova-Bobcheva S"

Browsing by Author "Sofkova-Bobcheva S"

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Blueberry firmness - A review of the textural and mechanical properties used in quality evaluations
(Elsevier B.V, 2022-10-01) Rivera S; Giongo L; Cappai F; Kerckhoffs H; Sofkova-Bobcheva S; Hutchins D; East A
Firmness is an important parameter for fresh blueberries as it influences the quality perceived by consumers and postharvest storage potential. However, the blueberry research community has not yet identified a universal standard method that can evaluate firmness for quality purposes. Different mechanical tests have been considered, offering different perspectives on this quality trait. This review summarises the most common methods previously used to evaluate textural and mechanical properties of fresh blueberries as influenced by pre- and postharvest factors. In addition, this review intends to assist the blueberry research community and commercial supply chain when selecting suitable methods to measure blueberry firmness as a fruit quality response. Different research initiatives to develop, optimize or standardise instrumental methods to assess blueberry firmness and relate to consumer sensory perception are reviewed. Mechanical parameters obtained by compression tests are the most previously used techniques to evaluate the influence of genotype, maturity, calcium, and postharvest management on blueberry firmness or to relate to sensory descriptors. However, standardising operational settings (e.g., compression distance, loading speed, and calculation procedures) is required to make results comparable across data collection conditions. Whether other mechanical test methods such as penetration or a combination of tests can better characterise blueberry quality or the relationship with consumer acceptance remains unknown and is worth studying.
Characterization of the Volatile Profiles of Six Industrial Hemp (Cannabis sativa L.) Cultivars
(American Society of Agronomy, 27/10/2022) Sofkova-Bobcheva S
Volatile organic compounds (VOCs) play an important role in plant ecology and can be useful in pest management. This work characterises, for the first time, the VOC emissions of six industrial hemp (Cannabis sativa L.) cultivars grown in New Zealand: CFX-2, CRS-1, Ferimon 12, Katani, Futura 75, and Finola. Volatiles emitted from flowers and foliage of eight-week-old plants were collected using a dynamic headspace sampling method and analysed using gas chromatography coupled to mass spectrometry. We assessed the effect of cultivar, sex (monoecious, male, and female), and site (i.e., two sites differing in soil types, maintained under irrigation and rain-fed conditions) on VOC emissions. Thirty-five volatile compounds were tentatively identified from the headspace samples of hemp plants, but none of the cultivars emitted all 35 compounds. β-Myrcene was the most abundant compound in most cultivars. Overall, there was a significant effect of sex, and the interaction of sex and cultivar on the volatile profiles, but no effect of site. Female plants typically emitted more volatiles than their male counterparts and monoecious cultivars. The main compounds driving the difference between cultivars and sexes were (Z)- and (E)-β-ocimene. We hypothesize that differences in emission emerged as a defence strategy to protect costly female flowers from herbivores (since C. sativa is wind pollinated), but this hypothesis needs further testing. We recommend additional studies exploring how biotic and abiotic factors influence hemp VOC emissions, changes in VOCs throughout the crop cycle, the role of VOCs in plant-insect interactions and their use in pest management.
Comparative evaluation of pumice as a soilless substrate for indoor Rubus idaeus L. cultivation
(Taylor and Francis Group on behalf of the Royal Society of New Zealand, 2024-07-21) Zhao R; Sofkova-Bobcheva S; Cartmill DL; Hardy D; Zernack A; Li M
Pumice is an abundant natural resource in New Zealand and its application in horticulture could save significant costs. To investigate the effect of pumice substrates on raspberry growth and fruit quality, two dwarfing selections (sel.8 and sel.110) were grown hydroponically in (1) coconut coir (control); (2) pumice; (3) pumice/coir (50/50 v/v); (4) pumice/flax (50/50 v/v). Results showed that the addition of pumice to coir significantly increased bulk density, which provided better root anchor support for plants, and also increased the water holding capacity (WHC). Pure pumice had a higher bulk density and lower porosity compared to the other tested substrates, which enhanced fruit quality and yield, although the vegetative growth was slightly lower compared to the control. Mixed pumice/flax substrate had the lowest porosity and poorer WHC, resulting in inferior raspberry growth vigour and productivity. Our results furthermore suggested different substrates could affect the one-year-old cane height, crop yield and fruit characteristics. Pumice was more suitable for sel.8, while the pumice/coir mixture promoted a higher yield for sel.110. In conclusion, pumice and pumice-based mix substrates can be successfully used for hydroponic dwarfing raspberry production without compromising yield and fruit quality.
Comparing vegetative growth patterns of cultivated (Daucus carota L. subsp. sativus) and wild carrots (Daucus carota L. subsp. carota) to eliminate genetic contamination from weed to crop
(Elsevier B.V., 2024-05-20) Godwin A; Pieralli S; Sofkova-Bobcheva S; Ward A; McGill C
Wild carrot is a problematic weed that can threaten the genetic purity of cultivated carrots by hybridization. Wild carrots must be controlled before flowering to avoid the undesirable crossing with cultivated carrots. Understanding wild carrot's vegetative growth pattern helps formulate sustainable weed management practices. However, little is known about the vegetative growth patterns of wild and cultivated carrots. A pot experiment was carried out to compare and model the vegetative growth pattern of different morphological traits in both wild and cultivated carrots. This study was executed in a glasshouse located in Palmerston North, New Zealand. A factorial randomized complete block design (RCBD) with two factors and four replications was used. The first factor was assigned to the carrot genotype (cultivated and wild) and the second factor to length of juvenile stages (12-weeks, 8-weeks, and 4-weeks). Plant height, leaf number, shoot fresh and dry weight, root fresh and dry weight, root diameter and root length were measured. Data were analyzed using analysis of variance (ANOVA), principal component analysis (PCA), correlation, and regression analysis. At the 8-week juvenile stage (9–11 leaves stage), wild carrot's shoot and root characteristics exhibited rapid growth. Correlation analysis indicated positive and significant (p < 0.05) correlations between above and below-ground morphological traits. PCA showed that morphological characteristics, except plant height, can be used to distinguish wild and cultivated carrots. To predict the vegetative growth pattern of most of the morphological traits of wild and cultivated carrots, power regression models were selected based on higher R2 and adj-R2 values and lower values of RMSE, AIC and BIC. The study showed wild carrots grew more quickly than cultivated carrots during the vegetative phase. It is recommended that appropriate weed management practices, such as hoeing, tilling, hand pulling, or herbicide spraying, be implemented before wild carrot leaf stages 9–11.
Data of texture profile analysis performed by different input settings on stored ‘Nui’ and ‘Rahi’ blueberries
(Elsevier Inc, 2021-10) Rivera S; Kerckhoffs H; Sofkova-Bobcheva S; Hutchins D; East A
Texture Profile Analysis is a well-established method for assessing mechanical properties of horticultural food products and consists of two compression cycles on a repeated motion to a given strain using a flat surface probe (i.e., compression plate). Input settings of target deformation (strain%) and duration (s) between compression cycles utilized for Texture Profile Analysis could influence output mechanical properties. The article provides data related to the ability of different Texture Profile Analysis operational settings to enable the separation of blueberries with variable mechanical properties. To create variable mechanical parameters of ‘Nui’ and ‘Rahi’ blueberries, fruit was stored in four relative humidity for 21 d at 4°C. For each storage humidity, mechanical properties of hardness (BH, N), hardness slope (BHS, kN m−1), apparent modulus of elasticity (E, MPa), and resilience (BR, -) were determined by utilizing two strain (15% or 30% of berry equatorial height). Meanwhile, mechanical parameters of cohesiveness (BCo, -), and springiness (BSp, -) were obtained by utilizing the combination of two strain (15% or 30%) and two duration between cycles (2 s and 10 s) as TPA operational settings. The statistical evaluation was conducted by one-way ANOVA, and the means of each storage humidity were separated according to the Tukey-HSD test (P = 0.05). The data presented in this article was used to select the Texture Profile Analysis operational settings utilized in the article entitled “Influence of water loss on mechanical properties of stored blueberries” Rivera et al. [1].
Influence of water loss on mechanical properties of stored blueberries
(Elsevier, 27/02/2021) Rivera S; Kerckhoffs H; Sofkova-Bobcheva S; Hutchins D; East A
Moisture loss is considered a main cause of blueberry softening during postharvest storage. However, the causal relationship between softening and water loss has only previously been described by force to 1 mm compression. This study was performed to identify suitable instrumental tests that allow the separation of blueberries with different water loss values during storage. Mechanical properties were measured by double compression (Texture Profile Analysis) and puncture test. Variability on blueberry mechanical properties was created by regulating storage humidity and consequently water loss. As water loss increases during storage, hardness slope (slope of a straight line drawn between the trigger force of 0.06 N and the force at 15 % strain) obtained by the compression test reduces, and the displacement at berry skin break obtained by puncture test, increases. Therefore, these parameters can be potentially used to quantify mechanical changes in stored blueberries.
Moringa oleifera L.: A Potential Plant for Greenhouse Gas Mitigation in Temperate Agriculture Systems
(Versita, 28/07/2022) Sofkova-Bobcheva S
The earth’s climate is changing because of the increase in greenhouse gas (GHG) concentration, to which livestock is a major contributor. Methane produced from cattle can be reduced by using high quality forages. This study compared the GHG produced from M. oleifera in an artificial ruminant system with two high quality pasture species, ryegrass and white clover. Methane and total gas production were measured using an in vitro batch culture system. A preliminary screening using oven dried M. oleifera planted in field and greenhouse, and a main experiment using six provenances of M. oleifera, a composite sample and M. oleifera leaves from greenhouse was undertaken. Both experiments compared the M. oleifera from different sources with high quality ryegrass and white clover. Real time gas production was recorded for 48 h, total gas production, methane analysed at 12 and 24 h. Short chain fatty acids concentration were also determined at the end of the fermentation. Preliminary results showed that M. oleifera leaves grown in field and greenhouse have lower gas and methane production compared with ryegrass, but similar to white clover. The differences were driven by a high production of propionic and butyric acids. The six M. oleifera provenances also produced less methane than ryegrass but were similar to white clover at 12 and 24 h after the start of fermentation. M. oleifera fermented faster than ryegrass or white clover. Hydrogen production from fermentation of M. oleifera might not have been diverted to methane production but removed by other compounds. In vitro fermentation showed differences in methane production across provenances. This suggests that it may be possible to select for low methane genotypes.
Phenological phase affects carrot seed production sensitivity to climate change - A panel data analysis
(Elsevier BV, 2023-09-20) Godwin A; McGill C; Ward A; Sofkova-Bobcheva S; Pieralli S; Paoletti E
New Zealand is a major producer of carrot seeds globally. Carrots are an important nutritional crop for human consumption. Since the growth and development of carrot seed crops mainly depend on climatic factors, seed yield is extremely susceptible to climate change. This modeling study was undertaken using a panel data approach to determine the impact of the atmospheric conditions (proxied by maximum and minimum temperature) and precipitation during the critical growth stages for seed production in carrot, viz., juvenile phase, vernalization phase, floral development phase, and flowering and seed development phase on carrot seed yield. The panel dataset was created using cross-sections from 28 locations within the Canterbury and Hawke's Bay regions of New Zealand that cultivate carrot seed crops and time series from 2005 to 2022. Pre-diagnostic tests were performed to test the model assumptions, and a fixed effect model was selected subsequently. There was significant (p < 0.01) variability in temperature and rainfall throughout different growing phases, except for precipitation at the vernalization phase. The highest rate of changes in maximum temperature, minimum temperature, and precipitation were recorded during the vernalization phase (+0.254 °C per year), floral development phase (+0.18 °C per year), and juvenile phase (-6.508 mm per year), respectively. Based on marginal effect analysis, the highest significant influence of minimum (187.724 kg/ha of seed yield decrease for each 1 °C increment) and maximum temperature (1 °C rise increases seed yield by 132.728 kg/ha), and precipitation (1 mm increment of rainfall decreases the seed yield by 1.745 kg/ha) on carrot seed yield were reported at vernalization, and flowering and seed development, respectively. The minimum and maximum temperatures have a higher marginal effect on carrot seed production. Analysis of the panel data demonstrates that the production of carrot seeds will be vulnerable to climatic change.
Probing the Phytochemical Composition and Antioxidant Activity of Moringa oleifera under Ideal Germination Conditions
(MDPI (Basel, Switzerland), 2023-08-21) Bhuker A; Malik A; Punia H; McGill C; Sofkova-Bobcheva S; Mor VS; Singh N; Ahmad A; Mansoor S; Setzer WN
Moringa oleifera is a rich source of polyphenols whose contents and profile may vary according to environmental conditions, harvest season, and plant tissue. The present study aimed to characterize the profile of phenolic compounds in different tissues of M. oleifera grown under different temperatures (25, 30, and 35 °C), using HPLC/MS, as well as their constituent phytochemicals and in vitro antioxidant activities. The in vitro antioxidant activity of the extracts was evaluated using the 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2-azino-bis-3-ethylenebenzothiozoline-6-sulfonicacid (ABTS), and ferric-reducing antioxidant power (FRAP) methods. The polyphenolic compounds were mainly found in the leaves at 30 °C. UPLC/QTOF-MS allowed for the identification of 34 polyphenolic components in seedlings, primarily consisting of glucosides, phenols, flavonoids, and methoxy flavones. At 30 °C, the specific activities of antioxidative enzymes were the highest in leaves, followed by seedlings and then seeds. The leaf and seed extracts also exhibited a greater accumulation of proline, glycine betaine, and antioxidants, such as ascorbic acid, and carotenoids, as measured by the inhibition of ROS production. We found that changes in the expression levels of the validated candidate genes Cu/Zn-SOD, APX, GPP, and TPS lead to significant differences in the germination rate and biochemical changes. These findings demonstrate that M. oleifera plants have high concentrations of phytochemicals and antioxidants, making them an excellent choice for further research to determine their use as health-promoting dietary supplements.
Pucciniastrum minimum is the causal agent of blueberry leaf rust on different Vaccinium species in Hawke’s Bay, New Zealand
(Springer Nature on behalf of the Australasian Plant Pathology Society Inc, 2023-03-01) Chen X; Mesarich CH; Kerckhoffs H; Hutchins D; Sofkova-Bobcheva S
Blueberry leaf rust has become a prevalent disease in New Zealand blueberry production. To identify the pathogen responsible for this disease in the Hawke’s Bay region of New Zealand, leaves showing signs or symptoms of rust infection were collected from three blueberry cultivars (‘Centra Blue’ [Rabbiteye], ‘Georgia Dawn’ [Southern Highbush] and ‘Nui’ [Northern Highbush]) and the pathogen subjected to morphological characterization using both scanning electron and bright-field microscopy. Meanwhile, genomic DNA was extracted from urediniospores of infected leaves collected from cultivar ‘Rahi’ (Rabbiteye) and the Internal Transcribed Spacer (ITS) region was sequenced and compared to the corresponding nucleotide sequence of known rust pathogens. Results from both experiments indicated that Pucciniastrum minimum (syn. Thekopsora minima) was the causal agent of blueberry leaf rust disease in Hawke’s Bay. Next, the level of disease caused by P. minimum was quantified on 23 blueberry cultivars in this region during the 2019 blueberry production season. Here, a total of 20 leaves selected from each cultivar were continually monitored, and the lesion area was calculated using ImageJ based on images taken in the field. Based on this analysis, all leaves were found to be infected by the rust pathogen. However, disease intensity, as a function of the ‘area under the disease progress curve’ (AUDPC) value, was found to be different. This suggests that certain cultivars display a lower disease intensity during the harvest season. Further field assessment covering a whole growing cycle will give a better understanding about blueberry leaf rust infection on these cultivars.
Structure-Function Characterisation of Eop1 Effectors from the Erwinia-Pantoea Clade Reveals They May Acetylate Their Defence Target through a Catalytic Dyad.
(MDPI (Basel, Switzerland), 2023-09-28) Tomar V; Rikkerink EHA; Song J; Sofkova-Bobcheva S; Bus VGM; Bhadauria V; Zhao W
The YopJ group of acetylating effectors from phytopathogens of the genera Pseudomonas and Ralstonia have been widely studied to understand how they modify and suppress their host defence targets. In contrast, studies on a related group of effectors, the Eop1 group, lag far behind. Members of the Eop1 group are widely present in the Erwinia-Pantoea clade of Gram-negative bacteria, which contains phytopathogens, non-pathogens and potential biocontrol agents, implying that they may play an important role in agroecological or pathological adaptations. The lack of research in this group of YopJ effectors has left a significant knowledge gap in their functioning and role. For the first time, we perform a comparative analysis combining AlphaFold modelling, in planta transient expressions and targeted mutational analyses of the Eop1 group effectors from the Erwinia-Pantoea clade, to help elucidate their likely activity and mechanism(s). This integrated study revealed several new findings, including putative binding sites for inositol hexakisphosphate and acetyl coenzyme A and newly postulated target-binding domains, and raises questions about whether these effectors function through a catalytic triad mechanism. The results imply that some Eop1s may use a catalytic dyad acetylation mechanism that we found could be promoted by the electronegative environment around the active site.
Yield and tuber quality variability in commercial potato cultivars under abiotic stress in New Zealand.
(2018) Siano A; Kerckhoffs LHJ; Roskruge N; Sofkova-Bobcheva S

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