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Item A comparative study between milk- and serum-based antibody detection assays for Johne's disease in New Zealand dairy cattle(Elsevier B.V., 2025-08-27) Venkatesh KM; Lopez-Villalobos N; Gupta SK; Udy GB; Laven R; Chiu S-J; Bugde P; Furuya Y; Dukkipati VSRDairy cattle are affected by Johne's disease. It is caused by Mycobacterium avium subspecies paratuberculosis (MAP). Suboptimal diagnostic tests add more to the productivity loss resulting from this disease. Agreement between and within different commercial kits is crucial in the decision-making process of disease surveillance programmes. This study compared two ELISAs, that is, Johne's disease commercial antibody detection kits (A and B), using milk and serum samples from New Zealand dairy cattle. These results were also compared with a subset of faecal PCR results. Five scenarios were considered for the comparison of ELISA tests. The point estimates of kappa coefficients (k) between the serum (0.84–0.94) assays were higher than the milk assays (0.59–0.82). The point estimates of kappa coefficients between serum and milk ELISA outcomes were higher for kit B (k = 0.79–0.86) than for kit A (k = 0.55–0.79). The point estimates of kappa coefficients between the ELISA and faecal PCR outcomes varied between 0.43 and 0.74. ELISA tests had point estimates of sensitivity ranging from 0.67 to 0.88 and specificity from 0.62 to 0.93, relative to the faecal PCR test. Results suggest that serum provides a better choice of sample type when both commercial kits A and B are used for Johne's disease surveillance of dairy cattle in New Zealand. Milk assays can be cost-effective to diagnose MAP-positive animals; kit B can be best suited for New Zealand conditions, provided the repeatability of the results is validated.Item Studies on the fertility and breeding management of New Zealand dairy cows : a thesis presented to Massey University as a requirement for the degree of Doctor of Science(Massey University, 1982) Macmillan, K. L.This thesis reviews an extensive research program on the fertility of dairy catt1e in New Zealand. Most of the work was completed between 1967 and 1977. It involved studying numerous basic aspects of reproductive physiology by analysing extensive amounts of data either lodged within a large centralised recording system, or produced through the participating cooperation of herd owners or inseminators. New concepts were developed and old recommendations sometimes found to be inappropriate.Item Can we estimate herd-level prevalence of lameness in dairy cow herds kept at pasture by sampling part of the herd?(Taylor and Francis Group on behalf of the New Zealand Veterinary Association, 2025-03-26) Sapkota S; Laven RA; Müller KR; Yang DAAims: To assess whether herd-level lameness prevalence can be estimated on New Zealand dairy farms, by scoring the first, middle, or last 100 cows in the milking order. In pasture-based herds, whole herd locomotion scoring requires an assessor outside the milking parlour throughout milking. If sufficiently predictive, sampling a proportion of the herd based on milking order, could reduce the costs and time of welfare assessments. Methods: Six pasture-based, spring-calving, dairy farms in the Manawatū region of New Zealand were conveniently selected. Visits occurred at approximately 6-week intervals between October 2021 and May 2022. Cows were scored using the DairyNZ lameness score (0–3). The assessor tallied cows as they left the parlour and recorded the milking order of those with a lameness score ≥ 2. Data were analysed to determine the association between farm, visit and the proportion of lame cows in the first, middle, and last 100 cows, and the agreement between the prevalence of lame cows in those groups and from whole herd scoring. Results: Across all visits, 263 lame cows were recorded. Of these, 40.7% were in the last 100, 25.9% in the middle 100, and 14.4% in the first 100. Farm, visit and their interactions with group were all statistically significant (p < 0.001). While, overall, the last 100 cows had the highest proportion of lame cows, this pattern varied across farms and visits, Limits-of-agreement plots showed that as herd prevalence increased, agreement between the prevalence in each sample group and herd prevalence worsened. When herd prevalence exceeded 5%, only the middle 100 sampling group had a limits-of-agreement < 5%. Conclusions: Variations across farms and seasons in the proportion of lame cows in each part of the milking order lead to variations in the accuracy of predicting overall lameness from such samples. Based on limits-of-agreement, observing the middle 100 cows is likely to be the most accurate sample, but is still likely to be of limited value on New Zealand dairy farms, especially as a single, one-off measurement. Clinical relevance: On New Zealand dairy farms, locomotion scoring the middle 100 cows in the milking order as part of a welfare assessment would reduce costs and time but would not produce an accurate estimate of whole-herd lameness prevalence. However, it may be useful as a screening tool in herds routinely locomotion scoring throughout the year.Item Development of evidence-based strategies to control Brucella spp. in dairy herds in Henan Province, China : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Veterinary Epidemiology at Massey University, Manawatu, New Zealand(Massey University, 2025-03-25) Wang, YuBrucella spp. remains a significant challenge in China, affecting the dairy industry and public health despite decades of voluntary control measures. This thesis aims to address key knowledge gaps in diagnosis, epidemiology, and disease impact of Brucella spp. in dairy herds to inform evidence-based control strategies in Henan Province, China. A scoping review of 61 studies (2004-2022) characterized the epidemiological landscape, revealing that B. abortus biovar 3 predominated 85.8% of Brucella spp. isolates recovered from dairy cattle in China. Considerable heterogeneity was observed in prevalence estimates and Brucella spp. isolation across provinces. These findings guided subsequent investigations into diagnostic accuracy, biosecurity practices, disease impact, and financial analyses. To enhance diagnostic accuracy, a cross-sectional study evaluated the diagnostic performance of four serological tests in Henan dairy herds. Using a novel Bayesian latent class model, optimal cut-off values were established for fluorescence polarization assay and competitive ELISA, estimating test sensitivity (69.7%-89.9%) and specificity (97.1%-99.6%). These findings provide a foundation for improving brucellosis diagnostic strategies. Beyond diagnosis, an assessment of farm biosecurity practices and stakeholder motivations was conducted using a structured questionnaire. Two distinct clusters of dairy herds were identified. Cluster 1, characterized by medium (400-1000) to large (>1000) herd sizes and higher educational levels, showed better adherence to proper biosecurity practices than Cluster 2. Stakeholders prioritized disease impacts and economic losses, highlighting the need for integrating these into the brucellosis control programs. To address this knowledge gap about disease impact, a longitudinal study estimated the effects of Brucella seroconversion on key production indicators. The annual incidence of seroconversion of brucellosis was 13.1% (95% CI: 10.9, 15.6) at the cow level. Seroconverted cows exhibited a reduction in daily milk yield (3.2 kg/day, 95% CI: 2.4, 4.0), elevated somatic cell counts, and increased pregnancy loss (relative risk: 4.26, 95% CI: 3.17, 5.73), compared to that of consistently negative cows. These findings provided essential epidemiological insights into the seroconversion of Brucella spp. and its implications on three essential dairy productivity outcomes. Building on these epidemiological insights, a financial analysis estimated the direct annual costs of Brucella infection at 78.9 Chinese Yuan (CNY) per animal and 4,019 CNY per infected cow. Among the three evaluated interventions (vaccination, test-and-culling, and test-and-culling plus vaccination), vaccination was the most cost-effective, yielding a benefit-cost ratio of 5.84 (95% CI: 4.34 – 7.42) and a net present value of 408.2 thousand CNY over ten years. Overall, this thesis integrates epidemiological, diagnostic, biosecurity, and financial analyses to inform evidence-based brucellosis control in Henan dairy herds. These findings could support farm stakeholders and policymakers in improving the control of Brucella spp. in Henan dairy herds, contributing to broader brucellosis control efforts in China.Item Changing epidemiology of Leptospirosis in New Zealand, with a focus on the novel strain of Leptospira borgpetersenii : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Palmerston North, New Zealand(Massey University, 2024-12-25) Sokolova, MarynaIn New Zealand, leptospirosis has been a common disease in dairy cattle since the 1940s. Six pathogenic Leptospira serovars from two species have been identified as endemic to New Zealand: Leptospira borgpetersenii serovars (sv.) Hardjobovis (Hardjo), Tarassovi, Ballum, Balcanica, and Leptospira interrogans sv. Pomona and Copenhageni. From these, sv. Pomona and Hardjo are the most commonly reported in cattle, and sv. Ballum, Tarassovi, and Copenhageni are less common. The estimated 99% of the national dairy herd is vaccinated against leptospirosis by vaccines containing antigens to Pomona and Hardjobovis and sometimes vaccines also include Copenhageni antigen. Vaccines for protecting dairy cows against Tarassovi were unavailable in New Zealand before December 2023. Historically, leptospirosis due to Tarassovi infection in New Zealand cattle was considered accidental and clinically unimportant. Serosurveys of apparently healthy cattle in New Zealand showed that over the past fifty years, Tarassovi seroprevalence increased from 6% (50/300) at MAT ≥ 50 to 18% (698/3878) at MAT ≥ 48. More recently, a serology and urine shedding study from 2015- 2016 evaluated the status of 4,000 dairy cows from 200 randomly selected farms, stratified by New Zealand's geographical location and herd size. The study found that on the animal level, 17% of the study animals showed evidence of past infection with Tarassovi, as defined by at least one sample reacting at MAT ≥ 48 for the study's purposes. Moreover, 96% (90/94) of PCR-positive urine samples were sequenced, and 68% (54/80) of those were found to have a novel allele in the sequenced region at the glmU loci. Thus, the use of molecular diagnostic tools, specifically molecular typing targeting a partial region of the glmU gene, allowed New Zealand researchers to identify a novel L. borgpetersenii strain, informally called strain (str.) Pacifica, in the urine of these cows. The 2015-2016 survey reported that dairy cows with Tarassovi titres were associated with urinary shedding, as determined by microscopic agglutination test (MAT) and polymerase chain reaction (PCR) testing, respectively. Because of this association, str. Pacifica is thought to belong to the serogroup Tarassovi. Additionally, the DNA of str. Pacifica has been retrospectively detected in cattle and deer samples dating back as early as 2007. Moreover, the 19-year (1999-2007) average annual incidence of notified human cases of Tarassovi leptospirosis was estimated at 12.59/100,000 in dairy farmers, compared to an overall annual average incidence of 2.01/100,000. These coincidental findings raised public health concerns. Therefore, at least some cases of Tarassovi seropositivity, as identified by MAT and reported before 2021, could partially be attributed to str. Pacifica. To confirm str. Pacifica's serogroup, isolation by culture and complete genetic characterisation of an isolate are required. Since str. Pacifica was only recently detected, its epidemiology, morphology, maintenance, and pathogenicity in the host population, as well as its impact on animal and human health, were not well understood. In this study, we investigated the possibility of isolating str. Pacifica from cow's urine by running a series of laboratory experiments where laboratory-adapted strains were used as a proxy for L. borgpetersenii str. Pacifica in the absence of an isolate to better understand its growth requirements. Laboratory-adapted Leptospira borgpetersenii strains were seeded into different types of media, and Leptospira growth rates were evaluated (Chapter 3). As a result, we ruled out unsuitable media and growth conditions, and this work helped to select the best media and growth conditions for a follow-up field investigation, where freshly collected cow's urine was seeded into selected media. Str. Pacifica was isolated from the urine of a shedding cow using HAN medium at 37°C and 5% CO2. However, this medium failed to sustain str. Pacifica and the culture was lost (Chapter 4). In addition, over the 2020-2021-2022 milking seasons, we collected and tested blood and urine samples from dairy farms, identified as str. Pacifica positive from the 2016 survey. Our results revealed that str. Pacifica was still maintained in the same dairy herds six years after initial detection. Moreover, we reported an estimated prevalence ratio (PR) of 7, indicating that the prevalence of shedders was seven times as high at the beginning than at the end of lactation in primiparous cows (Chapter 4). These findings provide evidence that str. Pacifica is adapted to dairy cows in New Zealand, and the peak shedding in primiparous heifers occurs in early lactation. Since the highest levels of str. Pacifica shedding were detected at the start of the milking season during peak milk production, which also coincides with a relatively short 3-month mating period, the associations between str. Pacifica and milk production and reproductive performance of milking cows were also investigated using herd test data and serological and PCR test results of the 2016 survey. Statistical models, including linear, logistic, and generalised mixed models with fixed and random effects, as well as a shared frailty survival model, were used to evaluate the associations between str. Pacifica positivity and reproduction (Chapter 5) and milk reproduction (Chapter 6) in dairy cows. Results of the statistical analysis of the association between str. Pacifica positivity and reproduction (Chapter 5) of dairy herds showed that str. Pacifica delayed the time from calving to conception (HR = 0.84; 95%: CI 0.74-0.96), although there was no effect on the pregnancy rate (Chapter 5). An analysis of milk production data did not reveal any associations with str. Pacifica at either animal or herd level (Chapter 6). The absence of clinical signs and the lack of association with milk production and reproduction at both the animal and herd levels provides further evidence towards str. Pacifica being well adapted to dairy cows. Therefore, evidence from this thesis suggests that dairy cattle are the maintenance host for str. Pacifica in New Zealand. It is also important to note that str. Pacifica shedders can infect people, especially dairy farmers, milkers, and farm workers who are in regular contact with str. Pacifica-shedding animals. Therefore, the prevention of str. Pacifica transmission via vaccination or the use of appropriate personal protective gear should be prioritised.Item Meta-analysis quantifying the potential of dietary additives and rumen modifiers for methane mitigation in ruminant production systems(Elsevier B.V. on behalf of KeAi Communications Co. Ltd, 2021-12) Almeida AK; Hegarty RS; Cowie AIncreasingly countries are seeking to reduce emission of greenhouse gases from the agricultural industries, and livestock production in particular, as part of their climate change management. While many reviews update progress in mitigation research, a quantitative assessment of the efficacy and performance-consequences of nutritional strategies to mitigate enteric methane (CH4) emissions from ruminants has been lacking. A meta-analysis was conducted based on 108 refereed papers from recent animal studies (2000-2020) to report effects on CH4 production, CH4 yield and CH4 emission intensity from 8 dietary interventions. The interventions (oils, microalgae, nitrate, ionophores, protozoal control, phytochemicals, essential oils and 3-nitrooxypropanol). Of these, macroalgae and 3-nitrooxypropanol showed greatest efficacy in reducing CH4 yield (g CH4/kg of dry matter intake) at the doses trialled. The confidence intervals derived for the mitigation efficacies could be applied to estimate the potential to reduce national livestock emissions through the implementation of these dietary interventions.Item A scoping review on the epidemiology and public significance of Brucella abortus in Chinese dairy cattle and humans(Elsevier B.V., 2024-01-31) Wang Y; Vallée E; Heuer C; Wang Y; Guo A; Zhang Z; Compton CBrucellosis, caused by Brucella spp., is a re-emerging One Health disease with increased prevalence and incidence in Chinese dairy cattle and humans, severely affecting animal productivity and public health. In dairy cattle, B. abortus is the primary causative agent although infections with other Brucella species occur occasionally. However, the epidemiological and comparative importance of B. abortus in dairy cattle and humans remains inadequately understood throughout China due to the heterogeneity in locations, quality, and study methods. This scoping review aims to describe the changing status of B. abortus infection in dairy cattle and humans, investigate the circulating Brucella species and biovars, and identify factors driving the disease transmission by retrieving publicly accessible literature from four databases. After passing the prespecified inclusion criteria, 60 original articles were included in the final synthesis. Although the reported animal-level and farm-level prevalence of brucellosis in dairy cattle was lower compared to other endemic countries (e.g. Iran and India), it has been reported to increase over the last decade. The incidence of brucellosis in humans displayed seasonal increases. The Rose Bengal Test and Serum Agglutination Test, interpreted in series, were the most used serological test to diagnose Brucella spp. in dairy cattle and humans. B. abortus biovar 3 was the predominant species (81.9%) and biovar (70.3%) in dairy cattle, and B. melitensis biovar 3 was identified as the most commonly detected strain in human brucellosis cases. These strains were mainly clustered in Inner Mongolia and Shannxi Province (75.7%), limiting the generalizability of the results to other provinces. Live cattle movement or trade was identified as the key factor driving brucellosis transmission, but its transmission pattern remains unknown within the Chinese dairy sector. These knowledge gaps require a more effective One Health approach to be bridged. A coordinated and evidence-based research program is essential to inform regional or national control strategies that are both feasible and economical in the Chinese context.Item Measuring hoof horn haemorrhage in heifers: A history.(Elsevier B.V., 2024-06-27) Laven R; Laven LUnderstanding the aetiology and pathogenesis of claw-horn disease (CHD) is essential for developing prevention/treatment programmes. Haemorrhages in the hoof horn (i.e. white line/sole haemorrhages) are an important part of the pathogenesis of CHD, being precursors to and predictors of lesions such as white-line disease and sole ulcer. Understanding haemorrhage development can provide useful information about the aetiology and pathogenesis of CHD. The development of hoof horn haemorrhages is best studied in cattle without previous claw-horn damage, as previous history of damage can markedly alter the hoof's response to stressors. Since the early 1990s, many prospective studies of the risk factors associated with CHD have been undertaken in late pregnant and early lactation heifers, which have a low risk of having had CHD but which are exposed to the same risk factors as lactating cows. Those studies have used a range of methods to assess hoof horn haemorrhages, with the principal focus, particularly initially (but also more recently), being on measuring lesion severity. However, as the science developed it became clear that measuring lesion extent was also important and that combining severity and extent in a single measure was the best approach to assess hoof horn haemorrhages. Studies of hoof horn haemorrhage in heifers have significantly increased our understanding of CHD, demonstrating the importance of housing and the relative lack of importance of post-calving nutrition. Most importantly, they have shown the importance of parturition as a risk factor for CHD, and how parturition interacts with other risk factors to accentuate their effect. The use of such studies has decreased in recent years, despite recent research showing that we still have much to learn from prospective studies of hoof horn haemorrhages in heifers.Item Assessing the welfare of pasture-based dairy cows of New Zealand and transhumance chauris of Nepal : a thesis presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Runenga Porehuroa, University of New Zealand, School of Veterinary Science, Manawatu(Massey University, 2024-06-14) Sapkota, SujanThere is no industry-recognized welfare assessment protocol for pasture-based dairy cows of New Zealand. Also, the welfare assessment in yak/chauri raised under the transhumance system is at the preliminary stage. So, there is a strong necessity of a pastured-based welfare assessment protocol for pasture-based dairy cows in New Zealand and transhumance yak/chauri in Nepal. The aim of the research studies presented in this thesis were to develop a practical and time-limited welfare assessment protocol suitable to pasture-based dairy farms, and transhumance yak chauri focused on a single visit around milking. During the process, 84 different welfare measures were collected from six protocols and 4 welfare studies which were screened and trialed in two pasture-based farms to finalise 32 welfare measures including 5 additional measures specific to New Zealand. These measures were tested on 23 different dairy farms from the Waikato and Manawatu. All the measures were feasible except for the measure related to water availability and behavior. Testing of the repeatability and reliability should be performed for all the selected measures on more number of farms before taking this protocol for commercial use. Also, we further did subsampling-based locomotion scoring on five different pasture-based dairy farms to know if they could predict herd level prevalence. The findings were that there was a significant association between the order in which cows were milked and their susceptibility to lameness. However, the percentage of lame cows within the sub-sampled group was not uniform and was significantly influenced by the farm and the timing of the visit. For our yak/chauri protocol, 31 potential welfare measures were submitted to 120 Nepalese experts for evaluation identifying 13 measures, plus a new one (hematology) was deemed useful. The resulting protocol was tested in five chauri herds in northern Nepal, encompassing animal-based evaluations, mastitis and parasite sampling, and hematology. The protocol was found to be feasible and offers a valuable starting point for yak/chauri welfare assessment.Item First report of the within-farm prevalence of bovine digital dermatitis in Chinese Holstein dairy cows in Jiangsu, China: A Bayesian modelling approach(Elsevier Ltd, 2024-06) Ma X; Laven RA; Jiang P; Yang DADigital dermatitis is one of the most important causes of lameness in dairy cattle, particularly in housed, intensively-managed cattle. The number of modern intensive dairy farms in China has increased markedly in recent years; however, we lack research on digital dermatitis in Chinese dairy cattle. This preliminary study aimed to estimate the prevalence of digital dermatitis on three conveniently selected farms in Jiangsu, China. The washed hind feet of all lactating cows on all three farms were examined during milking with the aid of a mobile phone light source. True prevalence was then estimated from the apparent prevalence using a Bayesian superpopulation approach to account for the imperfect nature of identifying digital dermatitis in cows during milking. Despite none of the farms having thought it necessary to implement routine digital dermatitis monitoring or control, the disease was found on all three sampled farms. All lesions observed were either chronic M4 or M4.1 type-lesions, with no M2 lesions (i.e. acute ulcerated lesions) observed. The estimated true prevalences on the farms were 7.3% (95% credible interval [CrI]: 5.4%-9.6%), 8.3% (95%CrI: 6.3%-10.8%), and 29.8% (95%CrI: 22.9%-37.2%).