|dc.description.abstract||Inflammatory Bowel Disease (IBD) is a group of chronic, immunologically-mediated gastrointestinal disorders resulting from interactions between environmental influences, host genetic susceptibility, and the intestinal microbiota. Dietary factors can ameliorate symptoms, providing a rationale for using targeted nutrition to alleviate symptoms. Food components, including milk-derived oligosaccharides and conjugated linoleic acid, have shown anti-inflammatory effects in IBD patients or animal models of IBD. Additionally, some ruminant milks are perceived by some IBD patients to have more beneficial effects on their symptoms (goat, sheep) than others (cow). Soy-based milk substitutes are perceived to be more beneficial than milk. No reports describe the effects of milk solids from different species on molecular pathways in the intestine that might explain differential effects in IBD. This thesis aimed to investigate the effects of dietary intervention with milk solids on the severity of colitis (histology) and molecular pathways (microarrays and qPCR) in the interleukin-10 gene deficient (Il10-/-) mouse model of IBD.
First, laser microdissection (LMD) combined with microarrays was used to analyse colon epithelium gene expression in 6 and 12 week old Il10-/- mice fed a control diet. This indicated that intact colon was an appropriate tissue in which to study global changes in gene expression when colitis is established. It also showed that studying colon epithelium during the early stages of inflammation (6 weeks old) may identify molecular changes not seen in intact colon. Secondly, analysis of DNA methylation changes (both globally, and in specific inflammation-associated genes (Ppara, Stat1 and Tap2)) in Il10-/- mouse colon showed that changes in total DNA methylation were correlated with changes in global gene expression, and changes in Stat1 methylation during inflammation correlated with Stat1 gene expression. However, these techniques had limitations for obtaining a global overview of molecular changes (DNA methylation) in response to dietary intervention in established inflammation (LMD) and therefore were not applied in the dietary intervention study. Finally, diets containing goat and cow whole milk solids (40% w/w) fed for 6 weeks had anti-inflammatory effects in the colon of 11-12 week old Il10-/- mice, shown by a reduction in colitis severity and immune-related gene expression. Further research is required to elucidate the physiological and molecular mechanisms of these anti-inflammatory effects.||en