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dc.contributor.authorGrange, Zoe Lorraine
dc.date.accessioned2015-06-11T22:31:57Z
dc.date.available2015-06-11T22:31:57Z
dc.date.issued2015
dc.identifier.urihttp://hdl.handle.net/10179/6700
dc.description.abstractPathogenic diseases are increasingly recognised as a challenge to the conservation of wildlife. Complex host-pathogen relationships and transmission dynamics in wild populations can limit our understanding of how pathogens contribute to the decline and endangerment of wildlife. Endangered wildlife populations maintained in reserves present a unique opportunity to investigate wildlife host-microbe relationships in a controlled semi-natural environment where diversity, abundance and the movement of species are restricted. The aim of this study was to investigate the prevalence and molecular differentiation of enteric bacteria carried by endangered takahe (Porphyrio hochstetteri). Through the use of network analysis and molecular epidemiology, the study explored the effects of geographic isolation and translocation on the prevalence, transmission and evolution of Campylobacter and Salmonella spp. within fragmented populations of takahe. Translocation and conservation management has created a dynamic network of takahe populations which vary in their likelihood to maintain and transmit pathogens. My study suggests that range expansion following a significant bottleneck and intensive conservation management of takahe has had unforeseen consequences on microbial diversity. The management of takahe in different environmental settings has influenced the carriage of Campylobacter jejuni and Campylobacter coli. A newly discovered rail-associated Campylobacter sp. nova 1 was prevalent in all populations. However, more discriminatory whole genome analysis of isolates detected a significant biogeographic variation in C. sp. nova 1 genotypes. Possible explanations for the observed pattern include the spatial expansion and isolation of hosts resulting in reduced gene flow of Campylobacter spp. and allopatric speciation, and the presence of heterogeneous environmental attributes or cross-species transmission of Campylobacter spp. from sympatric reservoir hosts. An assessment of vertebrate reservoirs in an island ecosystem indicated cross-species transmission of Campylobacter spp. was not likely to be a factor contributing to the maintenance and phylogeographical distribution of Campylobacter spp. in takahe. This study was the first of its kind to explore microbial dynamics in a large proportion of a well-described but fragmented population of a wild bird. Results suggest historic and current management practices may be having unforeseen influences on enteric microbes, the consequences of which are unknown but could be detrimental to the health of translocated populations of takahe.en_US
dc.language.isoenen_US
dc.publisherMassey Universityen_US
dc.rightsThe Authoren_US
dc.subjectTakaheen_US
dc.subjectPorphyrio hochstetterien_US
dc.subjectEndangered birdsen_US
dc.subjectEpidemiologyen_US
dc.subjectDisease ecologyen_US
dc.subjectRare birdsen_US
dc.subjectPathogenic diseasesen_US
dc.subjectWildlife conservationen_US
dc.subjectWild bird diseasesen_US
dc.titleEcology, epidemiology and evolution of enteric microbes in fragmented populations of the endangered takahe (Porphyrio hochstetteri) : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Manawatū, New Zealanden_US
dc.typeThesisen_US
thesis.degree.disciplineVeterinary Scienceen_US
thesis.degree.grantorMassey Universityen_US
thesis.degree.levelDoctoralen_US
thesis.degree.nameDoctor of Philosophy (Ph.D.)en_US


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