Angelin-Bonnet OVignes MBiggs PJBaldwin SThomson SHojsgaard D2024-11-062024-11-062024-09-25Angelin-Bonnet O, Vignes M, Biggs PJ, Baldwin S, Thomson S. (2024). Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package.. Genes (Basel). 15. 10. (pp. 1244-).2073-4425https://mro.massey.ac.nz/handle/10179/71935Background/Objectives: We present hidecan, an R package for generating visualisations that summarise the results of one or more genome-wide association studies (GWAS) and differential expression analyses, as well as manually curated candidate genes, e.g., extracted from the literature. This tool is applicable to all ploidy levels; we notably provide functionalities to facilitate the visualisation of GWAS results obtained for autotetraploid organisms with the GWASpoly package. Results: We illustrate the capabilities of hidecan with examples from two autotetraploid potato datasets. Conclusions: The hidecan package is implemented in R and is publicly available on the CRAN repository and on GitHub. A description of the package, as well as a detailed tutorial, is made available alongside the package. It is also part of the VIEWpoly tool for the visualisation and exploration of results from polyploids computational tools.(c) 2024 The Author/sCC BY 4.0https://creativecommons.org/licenses/by/4.0/R packageautotetraploiddifferential expressiongenome-wide association studiesvisualisationGenome-Wide Association StudySolanum tuberosumSoftwareHumansComputational BiologyJournal article10.3390/genes151012442073-4425journal-article1244-https://www.ncbi.nlm.nih.gov/pubmed/394573681244genes15101244