Browsing by Author "Hanly J"

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    A physically informed multi-scale deep neural network for estimating foliar nitrogen concentration in vegetation
    (Elsevier B.V., 2024-05-28) Dehghan-Shoar MH; Kereszturi G; Pullanagari RR; Orsi AA; Yule IJ; Hanly J
    This study introduces a Physically Informed Deep Neural Network (PINN) that leverages spectral data and Radiative Transfer Model insights to improve nitrogen concentration estimation in vegetation, addressing the complexities of physical processes. Utilizing a comprehensive spectroscopy dataset from various species across dry/ground (n = 2010), leaf (n = 1512), and canopy (n = 6007) scales, the study identifies 13 spectral bands key for chlorophyll and protein quantification. Key bands at 2276 nm, 755 nm, 1526 nm, 2243 nm, and 734 nm emerged vital for accurate N% prediction. The PINN outperforms partial least squares regression and standard deep neural networks, achieving an R2 of 0.71 and an RMSE of 0.42 (%N) on an independent validation set. Results indicate dry/ground data performed best (R2 = 0.9, RMSE = 0.24 %N), with leaf and canopy data showing lower efficacy (R2 = 0.67, RMSE = 0.45 %N; R2 = 0.65, RMSE = 0.46 %N, respectively). This multi-scale approach provides insights into spectral and N% relationships, enabling precise estimation across vegetation types and facilitating the development of transferable models. The PINN offers a new avenue for analyzing remote sensing data, demonstrating the significant potential for accurate, scale-spanning N% estimation in vegetation. Further enriching our analysis, the inclusion of seasonal data significantly enhanced our model's performance in field spectroscopy, with notable improvements observed across summer, spring, autumn, and winter. This adjustment underlines the model's increased accuracy and predictive capability at the field spectroscopy scale, emphasizing the vital role of integrating environmental factors, including climatic and physiological aspects, in future research.
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    A Unified Physically Based Method for Monitoring Grassland Nitrogen Concentration with Landsat 7, Landsat 8, and Sentinel-2 Satellite Data
    (MDPI (Basel, Switzerland), 2023-05-09) Dehghan-Shoar MH; Pullanagari RR; Kereszturi G; Orsi AA; Yule IJ; Hanly J; Berger K; Croft H; Liu T; Lu B; Yin D
    The increasing number of satellite missions provides vast opportunities for continuous vegetation monitoring, crucial for precision agriculture and environmental sustainability. However, accurately estimating vegetation traits, such as nitrogen concentration (N%), from Landsat 7 (L7), Landsat 8 (L8), and Sentinel-2 (S2) satellite data is challenging due to the diverse sensor configurations and complex atmospheric interactions. To address these limitations, we developed a unified and physically based method that combines a soil–plant–atmosphere radiative transfer (SPART) model with the bottom-of-atmosphere (BOA) spectral bidirectional reflectance distribution function. This approach enables us to assess the effect of rugged terrain, viewing angles, and illumination geometry on the spectral reflectance of multiple sensors. Our methodology involves inverting radiative transfer model variables using numerical optimization to estimate N% and creating a hybrid model. We used Gaussian process regression (GPR) to incorporate the inverted variables into the hybrid model for N% prediction, resulting in a unified approach for N% estimation across different sensors. Our model shows a validation accuracy of 0.35 (RMSE %N), a mean prediction interval width (MPIW) of 0.35, and an R (Formula presented.) of 0.50, using independent data from multiple sensors collected between 2016 and 2019. Our unified method provides a promising solution for estimating N% in vegetation from L7, L8, and S2 satellite data, overcoming the limitations posed by diverse sensor configurations and complex atmospheric interactions.
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    Nitrogen Excretion by Dairy Cows Grazing Plantain (Plantago lanceolata) Based Pastures during the Lactating Season
    (MDPI (Basel, Switzerland), 2022-02-14) Navarrete S; Rodriguez M; Horne D; Hanly J; Hedley M; Kemp P
    The use of plantain pasture in dairy systems can potentially reduce nitrogen (N) leaching losses via the lower N concentration in the urine (UNc) of cows. Reducing the urinary N load while cows graze pastures can reduce the risk of N leaching losses from urine patches. Research needs to demonstrate that these environmental benefits are not at the expense of milk production and farm profit. Three groups of 20 cows grazed in the following three pasture treatments: (i) plantain, (ii) plantain-clover mix (plantain, red [Trifolium pratense] and white clover), or (iii) ryegrass-white clover (wc) pastures, from spring to autumn for two years. Each year, pasture intake, diet quality, milk production and animal N (milk and urine) excretion were evaluated in spring, summer, and autumn. The cows grazing the plantain and plantain-clover mix pastures produced similar milk solids as cows grazing ryegrass-wc pasture but reduced their UNc during summer and autumn, when compared to those grazing the plantain-clover mix and ryegrass-wc pastures. Plantain reduced urinary N loads onto pastures by a greater number of urine patches with lower urinary N loading rates. The results demonstrate that plantain pastures do not diminish milk solids production from cows, and the lower UNc from summer to autumn could reduce N being lost to the environment.