Browsing by Author "Hunter S"

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    A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease.
    (2023-02) Wierenga JR; Morgan KJ; Hunter S; Taylor HS; Argilla LS; Webster T; Dubrulle J; Jorge F; Bostina M; Burga L; Holmes EC; McInnes K; Geoghegan JL
    Yellow-eyed penguins (Megadyptes antipodes), or hoiho in te reo Māori, are predicted to become extinct on mainland Aotearoa New Zealand in the next few decades, with infectious disease a significant contributor to their decline. A recent disease phenomenon termed respiratory distress syndrome (RDS) causing lung pathology has been identified in very young chicks. To date, no causative pathogens for RDS have been identified. In 2020 and 2021, the number of chick deaths from suspected RDS increased four- and five-fold, respectively, causing mass mortality with an estimated mortality rate of >90%. We aimed to identify possible pathogens responsible for RDS disease impacting these critically endangered yellow-eyed penguins. Total RNA was extracted from tissue samples collected during post-mortem of 43 dead chicks and subject to metatranscriptomic sequencing and histological examination. From these data we identified a novel and highly abundant gyrovirus (Anelloviridae) in 80% of tissue samples. This virus was most closely related to Gyrovirus 8 discovered in a diseased seabird, while other members of the genus Gyrovirus include Chicken anaemia virus, which causes severe disease in juvenile chickens. No other exogenous viral transcripts were identified in these tissues. Due to the high relative abundance of viral reads and its high prevalence in diseased animals, it is likely that this novel gyrovirus is associated with RDS in yellow-eyed penguin chicks.
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    A retrospective analysis of post-mortem findings in New Zealand weka (Gallirallus australis), 1995-2022
    (Taylor and Francis Group, 2024-11-10) Wichtel N; Vallée E; McInnes K; Hunter S
    AIMS: To determine the major causes of mortality in weka (Gallirallus australis), and to investigate associations between causes of mortality and captivity status, age, sex, decade of submission, and season. METHODS: Necropsy records were obtained from the Massey University School of Veterinary Science/Wildbase Pathology database (Palmerston North, NZ) for weka submitted between 1 January 1995 and 22 March 2022. Causes of mortality were classified into categories based on aetiology. Frequency of diagnosis was tested for association with region of submission, captivity status, age, sex, decade, and season of death. RESULTS: A total of 156 necropsy reports were included in this study, of which 96 (61%) were from wild weka, 57 (36.5%) were captive, and three (1.9%) were of an unspecified captivity status. Weka were submitted from 12 regions across New Zealand. There were 65 (41.7%) adults, 16 (10.3%) juveniles, and 75 (48.1%) weka of an undetermined age among the 156 submissions. Of the weka with a known sex, there was a similar distribution between sexes with 27 (17.3%) males and 29 (18.6%) females. A cause of death was determined in 132/156 (84.6%) cases, with 24/156 (15.4%) cases having an unknown diagnosis. The leading cause of mortality in weka was traumatic injury, which occurred in 65/156 (41.7%), followed by infectious and/or inflammatory diseases in 26/156 (16.7%), and degenerative and/or nutritional conditions affecting 20/156 (12.8%) cases. The distribution of the primary causes of death was found to be dependent on captivity status (p < 0.001). Traumatic and toxic causes of death were more frequent in wild than captive weka. The cause of death was also dependent on season (p < 0.001). There was a significant difference in cause of death between summer and all other seasons (spring p = 0.008; autumn p < 0.001; winter p < 0.001) and between autumn and winter (p = 0.008). CONCLUSION: Trauma was identified as the most significant cause of mortality in the free-living weka necropsied. The inherent and uncertain submissions biases, and low case numbers over a long period of time, means that temporal patterns and the effect of captivity status on causes of mortality should be interpreted with caution.
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    Assessing animal welfare during a stranding of pygmy killer whales (Feresa attenuata)
    (John Wiley and Sons, Inc., 2023-10-01) Boys RM; Beausoleil NJ; Hunter S; Betty EL; Hinton B; Stockin KA
    Empirical assessment of cetacean welfare to inform stranding interventions is lacking. Here, potential welfare indicators are described for two stranded pygmy killer whales (Feresa attenuata), along with euthanasia procedures and pathology of potential relevance. The animals were filmed for 3.5 and 1.5 hr, respectively, allowing assessment of 19 indicators, including animal behaviors and human interventions. Eight interventions and 19 animal behaviors were identified; 17 and 11 behaviors were displayed by animal 1 and 2, respectively. Examination of ballistics euthanasia revealed atypical projectile placement and characterized animal behavioral responses, but welfare implications could not be assessed as insensibility was not verified in-field. Pulmonary edema and renal degeneration were documented in both animals; differential etiologies include ischemia–reperfusion, shock, and/or myopathy. Potential relationships among histopathology and welfare indicators are explored to infer affective experiences. For example, simultaneous head-lifting with respiration increased over time which, alongside pulmonary edema, suggests these animals experienced breathlessness. Other likely affective states include fatigue and discomfort; there are insufficient data to estimate the intensity or duration of these experiences or to provide an overall welfare grade/score. Further data are required to validate the proposed welfare indicators and to progress development of holistic approaches to welfare assessment at cetacean strandings.
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    Evaluation of ballistics euthanasia applied to stranded cetaceans using ethological and post-mortem computed tomography assessment
    (Springer Nature, 2024-09-17) Boys RM; Kot BCW; Lye G; Beausoleil NJ; Hunter S; Stockin KA
    Debilitated stranded cetaceans with low survival likelihood, may require euthanasia to avoid further suffering. Euthanasia can involve chemical or physical methods, including ballistics. Ballistics should cause instantaneous, permanent insensibility through brainstem disruption. Despite wide application, there is limited understanding of ballistics-related welfare outcomes. We opportunistically examined behaviour of three maternally-dependent cetaceans following shooting and the related cranial disruption post-mortem using computed tomography (PMCT). Our aim was to understand whether a 'humane death', i.e., euthanasia, was achieved. Each animal was shot using different projectile types: soft non-bonded, solid, and soft bonded. In two animals, insensibility was not immediately assessed following shooting, although both were reported as 'instantaneously insensible'. From our analysis, all animals displayed musculoskeletal responses to shooting, including peduncle stiffening and slack lower jaw, followed by musculature relaxation 24-, 10.3- and 20.8-seconds post-ballistics, respectively. The animal shot with a soft non-bonded projectile also displayed agonal convulsions and tail-lifting for 16-seconds post-shot; these were not observed for solid or soft bonded projectiles. PMCT findings indicated projectile disruption to the brainstem and/or spinal cord likely to cause near-instantaneous insensibility. However, extra-cranial wounding was also evident for the soft non-bonded projectile, highlighting potential for additional welfare compromise. Our results demonstrate that ballistics can achieve a relatively rapid death in young, stranded cetaceans, but careful equipment selection is required. To ensure a humane death, verification of insensibility must be undertaken immediately following shooting. Further studies should be undertaken to improve knowledge of appropriate procedures and equipment for euthanasia, ensuring humane deaths for compromised cetaceans.
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    Health impacts of poor water quality on an endangered shorebird breeding programme in Aotearoa New Zealand.
    (Taylor and Francis Group, 2024-02-04) Gartrell BD; Hunter S; Collen R; Jolly M; McInnes K; Richardson A; Reed C; Ward R; Pita A
    CASE HISTORY: Two clusters of mortality among endangered tūturuatu/tchūriwat'/shore plover (Thinornis novaeseelandiae) have occurred at captive breeding facilities around New Zealand in recent years. In the first, four chicks died at Pūkaha National Wildlife Centre (Mount Bruce, NZ) in February 2016, and in the second five adult birds at the Cape Sanctuary (Cape Kidnappers, NZ) died in 2022. CLINICAL FINDINGS: In 2016, four chicks were noted to become weak, have increased vocalisations and closed eyes prior to death. The remaining chicks were treated for 5 days with amoxycillin/clavulanate orally twice daily. Water containers and brooders were cleaned and disinfected with chlorhexidine. No further mortality was seen.In the 2022 cluster, three adult breeding birds died acutely and five others showed inappetence, weight loss and diarrhoea approximately 10 days after heavy rains flooded the local river. The five birds were treated with amoxycillin/clavulanate orally twice daily and oral fluids for 5 days. Two birds died and three survived. No breeding occurred in the aviaries in the following season. PATHOLOGICAL FINDINGS: In 2016, the chicks showed pulmonary changes ranging from congestion and oedema to heterophilic inflammation consistent with septicaemia.In 2022, the adult birds showed proliferation of bacteria in the distal small intestine associated with mucosal ulceration and heterophilic infiltration. Acid-fast staining of the caecal contents in one bird showed organisms consistent with Cryptosporidium spp. LABORATORY FINDINGS: Aerobic bacterial cultures of the lung and liver of two affected chicks carried out in 2016 showed heavy growth of Plesiomonas shigelloides. The same organism was cultured from water trays and holding tanks containing water boatmen (Sigara arguta) on which the chicks were fed.In 2022, cultures from the livers of three dead birds each showed a mixed bacterial growth with differing dominant organisms (Aeromonas sobria, Hafnia alvei, Citrobacter freundii and an Enterococcus sp.). PCR and sequencing confirmed Cryptosporidium parvum in the caecum of one bird. Fresh faeces from 24 breeding birds from the captive breeding facilities were negative by PCR for Cryptosporidium spp.The captive breeding facilities obtain water for the aviaries and aquatic invertebrates to feed to the chicks from local freshwater sources. Water quality testing at the Cape Sanctuary revealed concentrations of faecal indicator bacteria in excess of safe drinking water guidelines, with peaks following heavy rainfall. CLINICAL RELEVANCE: Fluctuations in water quality associated with mammalian faecal bacteria can adversely affect bird health and impact on captive rearing of endangered wildlife.
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    Suspected brodifacoum poisoning in tuatara (Sphenodon punctatus)
    (Taylor and Francis Group on behalf of the New Zealand Veterinary Association, 2025-05-04) Mehta S; Booth L; Hunter S; Jolly M; Gartrell BD
    Case history: Between June 2017 and April 2019, three captive tuatara from a zoological facility in the South Island of New Zealand were found unwell and admitted to veterinary care. One other tuatara from the same facility was found dead from misadventure in May 2019. Clinical findings: All three unwell tuatara showed clinical signs of lethargy, mucous membrane pallor, and dehydration, with haematoma formation/swelling in dependent parts of the body. Fine needle aspiration and cytology of the swellings showed common features of peripheral blood, with variable other cytological findings. Haematology confirmed marked anaemia in Case 1 (PCV 5%; reference range 22–53%) and Case 2 (PCV 1%) and suspected mild anaemia in Case 3 (PCV 27%). Case 1 died 6 weeks after initial presentation, whereas Cases 2 and 3 died soon after presentation. Pathological findings: Post-mortem examination showed general pallor of soft tissues in the three tuatara with clinical signs of coagulopathy. There was haemorrhage in the bladder wall of Case 1, while Cases 2 and 3 had haematomas (subcutaneous in Case 2 and peri-oesophageal in Case 3). The pathological diagnosis in Case 4 was death by asphyxiation following burrow collapse. Retrospective analysis showed brodifacoum was present in liver tissue at a concentration of 0.26 mg/kg in Case 3, and in skeletal muscle tissue at concentrations of 0.019 mg/kg in Case 2 and 0.035 mg/kg in the non-clinical case (Case 4). Diagnosis: The clinical signs and post-mortem findings were consistent with anticoagulant poisoning in three tuatara, and tissue concentrations of brodifacoum demonstrated exposure in three animals, including one animal with no clinical signs of coagulopathy (Case 4). Definitive diagnosis was prevented, however, by inconsistent toxicology testing and a limited understanding of toxicity thresholds in reptiles in general, and tuatara specifically. Clinical relevance: This case series suggests that tuatara are susceptible to anticoagulant poisoning and this has implications for both the captive management of tuatara, and also the use of rodenticides in tuatara habitat, such as offshore islands and mainland sanctuaries.
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    The Pathology of Fatal Avian Malaria Due to Plasmodium elongatum (GRW6) and Plasmodium matutinum (LINN1) Infection in New Zealand Kiwi (Apteryx spp.)
    (MDPI (Basel, Switzerland), 2022-12-01) Gulliver E; Hunter S; Howe L; Castillo-Alcala F; Hartup B
    Avian malaria caused by Plasmodium species is a known cause of mortality in avifauna worldwide, however reports within New Zealand kiwi (Apteryx spp.) are scant. Postmortem reports from kiwi were obtained from the Massey University/Te Kunenga ki Pūrehuroa School of Veterinary Science Pathology Register from August 2010-August 2020. Gross lesions were described from postmortem reports, and archived H.E.-stained slides used for histological assessment. Nested PCR testing was performed on formalin-fixed paraffin-embedded tissue samples to assess the presence of Plasmodium spp. and Toxoplasma gondii DNA and cases with a PCR-positive result were sequenced to determine the lineage involved. Of 1005 postmortem reports, 23 cases of confirmed or suspected avian malaria were included in this study. The most consistent gross lesions included splenomegaly, hepatomegaly, and interstitial pneumonia with oedema. Histological lesions were characterised by severe interstitial pneumonia, pulmonary oedema, interstitial myocarditis, hepatic sinusoidal congestion and hypercellularity, and splenic macrophage hyperplasia and hyperaemia/congestion with numerous haemosiderophages. Cytoplasmic meronts were consistently found within endothelial cells of a variety of tissues, and within tissue macrophages of the liver, lung and spleen. A diagnosis of avian malaria was confirmed via PCR testing in 13 cases, with sequencing revealing P. matutinum (LINN1) and P. elongatum (GRW6) as the species involved. This is the largest case series describing the pathology of avian malaria as a cause of mortality in endemic New Zealand avifauna.
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    Total infectome investigation of diphtheritic stomatitis in yellow-eyed penguins (Megadyptes antipodes) reveals a novel and abundant megrivirus.
    (Elsevier B.V., 2023-11-01) Wierenga JR; Grimwood RM; Taylor HS; Hunter S; Argilla LS; Webster T; Lim L; French R; Schultz H; Jorge F; Bostina M; Burga L; Swindells-Wallace P; Holmes EC; McInnes K; Morgan KJ; Geoghegan JL
    First identified in 2002, diphtheritic stomatitis (DS) is a devastating disease affecting yellow-eyed penguins (Megadyptes antipodes, or hoiho in te reo Māori). The disease is associated with oral lesions in chicks and has caused significant morbidity and mortality. DS is widespread among yellow-eyed penguin chicks on mainland New Zealand yet appears to be absent from the subantarctic population. Corynebacterium spp. have previously been suspected as causative agents yet, due to inconsistent cultures and inconclusive pathogenicity, their role in DS is unclear. Herein, we used a metatranscriptomic approach to identify potential causative agents of DS by revealing the presence and abundance of all viruses, bacteria, fungi and protozoa - together, the infectome. Oral and cloacal swab samples were collected from presymptomatic, symptomatic and recovered chicks along with a control group of healthy adults. Two novel viruses from the Picornaviridae were identified, one of which - yellow-eyed penguin megrivirus - was highly abundant in chicks irrespective of health status but not detected in healthy adults. Tissue from biopsied oral lesions also tested positive for the novel megrivirus upon PCR. We found no overall clustering among bacteria, protozoa and fungi communities at the genus level across samples, although Paraclostridium bifermentans was significantly more abundant in oral microbiota of symptomatic chicks compared to other groups. The detection of a novel and highly abundant megrivirus has sparked a new line of inquiry to investigate its potential association with DS.
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    Ventral dermatitis in rowi (Apteryx rowi) due to cutaneous larval migrans.
    (2015-04) Gartrell BD; Argilla L; Finlayson S; Gedye K; Gonzalez Argandona AK; Graham I; Howe L; Hunter S; Lenting B; Makan T; McInnes K; Michael S; Morgan KJ; Scott I; Sijbranda D; van Zyl N; Ward JM
    The rowi is a critically endangered species of kiwi. Young birds on a crèche island showed loss of feathers from the ventral abdomen and a scurfy dermatitis of the abdominal skin and vent margin. Histology of skin biopsies identified cutaneous larval migrans, which was shown by molecular sequencing to be possibly from a species of Trichostrongylus as a cause of ventral dermatitis and occasional ulcerative vent dermatitis. The predisposing factors that led to this disease are suspected to be the novel exposure of the rowi to parasites from seabirds or marine mammals due to the island crèche and the limited management of roost boxes. This is the first instance of cutaneous larval migrans to be recorded in birds. Severe and fatal complications of the investigation resulted in the death of eight birds of aspergillosis and pulmonary complications associated with the use of bark as a substrate in hospital. Another bird died of renal failure during the period of hospitalisation despite oral and intravenous fluid therapy. The initiating cause of the renal failure was not determined. These complications have the potential to undermine the working relationship between wildlife veterinarians and conservation managers. This case highlights that intensive conservation management can result in increased opportunities for novel routes of cross-species pathogen transmission.
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    What's in a database? Insights from a retrospective review of penguin necropsy records in Aotearoa New Zealand
    (PLOS, 2025-04-30) Saverimuttu S; Hunter S; Gartrell B; McInnes K; Warren K; Pas A; Chatterton J; Yeap L; Jackson B; Raverty S
    Wildlife necropsy databases often provide data for morbidity and mortality studies of free-ranging species, with implicit relevance for conservation goals, as well as domestic animal and human health. Retrospective reviews are a common way to derive insights from such opportunistic data, despite the methodological difficulties of performing these analyses, alongside findings being prone to bias. This study reviews morbidity and mortality data from Sphenisciformes of Aotearoa New Zealand, using records extracted and manually refined from submissions to the national Wildbase Pathology Register. The review corroborates the broader consensus that hoiho (yellow eyed penguin, Megadyptes antipodes) are most commonly diagnosed with infectious/inflammatory disease (43.1%, 422/978 diagnoses), kororā (blue penguin, Eudyptula minor) with traumatic injuries (42.9%, 156/364 diagnoses), and emaciation being a common finding across both species (33.9%, 393/1463 diagnoses). Further, there are marked spatiotemporal trends in submissions, driven primarily by the affected species and the submitting organisations, highlighting the biases within such databases that must be factored into the application of results. Typographical errors, redundancies from synonymous terms, and missing data are captured as barriers to performing manual reviews of free-text data. Overall, this study highlights strengths and limitations of storage and review of wildlife necropsy data while providing insight into threats faced by the penguins of Aotearoa.