Browsing by Author "Liu B"
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- ItemA multi-label classification model for full slice brain computerised tomography image(BioMed Central Ltd, 2020-11-18) Li J; Fu G; Chen Y; Li P; Liu B; Pei Y; Feng HBACKGROUND: Screening of the brain computerised tomography (CT) images is a primary method currently used for initial detection of patients with brain trauma or other conditions. In recent years, deep learning technique has shown remarkable advantages in the clinical practice. Researchers have attempted to use deep learning methods to detect brain diseases from CT images. Methods often used to detect diseases choose images with visible lesions from full-slice brain CT scans, which need to be labelled by doctors. This is an inaccurate method because doctors detect brain disease from a full sequence scan of CT images and one patient may have multiple concurrent conditions in practice. The method cannot take into account the dependencies between the slices and the causal relationships among various brain diseases. Moreover, labelling images slice by slice spends much time and expense. Detecting multiple diseases from full slice brain CT images is, therefore, an important research subject with practical implications. RESULTS: In this paper, we propose a model called the slice dependencies learning model (SDLM). It learns image features from a series of variable length brain CT images and slice dependencies between different slices in a set of images to predict abnormalities. The model is necessary to only label the disease reflected in the full-slice brain scan. We use the CQ500 dataset to evaluate our proposed model, which contains 1194 full sets of CT scans from a total of 491 subjects. Each set of data from one subject contains scans with one to eight different slice thicknesses and various diseases that are captured in a range of 30 to 396 slices in a set. The evaluation results present that the precision is 67.57%, the recall is 61.04%, the F1 score is 0.6412, and the areas under the receiver operating characteristic curves (AUCs) is 0.8934. CONCLUSION: The proposed model is a new architecture that uses a full-slice brain CT scan for multi-label classification, unlike the traditional methods which only classify the brain images at the slice level. It has great potential for application to multi-label detection problems, especially with regard to the brain CT images.
- ItemCascaded Segmented Matting Network for Human Matting(IEEE, 2021-11-04) Liu B; Jing H; Qu G; Guesgen HW; Raval MSHuman matting, high quality extraction of humans from natural images, is crucial for a wide variety of applications such as virtual reality, augmented reality, entertainment and so on. Since the matting problem is an ill-posed problem, most previous methods rely on extra user inputs such as trimap or scribbles as guidance to estimate alpha value for the pixels that are in the unknown region of the trimap. This phenomenon makes it difficult to be applied to large scale data. In order to solve these problems, we studied the unique role of semantics and details in image matting, and decomposed the matting task into two sub-tasks: trimap segmentation based on high-level semantic information and alpha regression based on low-level detailed information. Specifically, we proposed a novel Cascaded Segmented Matting Network (CSMNet), which uses a shared encoder and two separate decoders to learn these two tasks in a collaborative way to achieve the end-to-end human image matting. In addition, we established a large-scale dataset with 14,000 fine-labeled human matting images. A background dataset is also built to simulate real pictures. Comprehensive empirical studies on above datasets demonstrate that CSMNet could produce a stable and accurate alpha matte without the input of trimap and achieve an evaluation value that is comparable to the algorithm that requires trimap.
- ItemComparison of algorithms for road surface temperature prediction(Emerald Publishing Limited, 2018-12-13) Liu B; Shen L; You H; Dong Y; Li J; Li YPurpose: The influence of road surface temperature (RST) on vehicles is becoming more and more obvious. Accurate predication of RST is distinctly meaningful. At present, however, the prediction accuracy of RST is not satisfied with physical methods or statistical learning methods. To find an effective prediction method, this paper selects five representative algorithms to predict the road surface temperature separately. Design/methodology/approach: Multiple linear regressions, least absolute shrinkage and selection operator, random forest and gradient boosting regression tree (GBRT) and neural network are chosen to be representative predictors. Findings: The experimental results show that for temperature data set of this experiment, the prediction effect of GBRT in the ensemble algorithm is the best compared with the other four algorithms. Originality/value: This paper compares different kinds of machine learning algorithms, observes the road surface temperature data from different angles, and finds the most suitable prediction method.
- ItemDeepPN: a deep parallel neural network based on convolutional neural network and graph convolutional network for predicting RNA-protein binding sites.(2022-06-29) Zhang J; Liu B; Wang Z; Lehnert K; Gahegan MBACKGROUND: Addressing the laborious nature of traditional biological experiments by using an efficient computational approach to analyze RNA-binding proteins (RBPs) binding sites has always been a challenging task. RBPs play a vital role in post-transcriptional control. Identification of RBPs binding sites is a key step for the anatomy of the essential mechanism of gene regulation by controlling splicing, stability, localization and translation. Traditional methods for detecting RBPs binding sites are time-consuming and computationally-intensive. Recently, the computational method has been incorporated in researches of RBPs. Nevertheless, lots of them not only rely on the sequence data of RNA but also need additional data, for example the secondary structural data of RNA, to improve the performance of prediction, which needs the pre-work to prepare the learnable representation of structural data. RESULTS: To reduce the dependency of those pre-work, in this paper, we introduce DeepPN, a deep parallel neural network that is constructed with a convolutional neural network (CNN) and graph convolutional network (GCN) for detecting RBPs binding sites. It includes a two-layer CNN and GCN in parallel to extract the hidden features, followed by a fully connected layer to make the prediction. DeepPN discriminates the RBP binding sites on learnable representation of RNA sequences, which only uses the sequence data without using other data, for example the secondary or tertiary structure data of RNA. DeepPN is evaluated on 24 datasets of RBPs binding sites with other state-of-the-art methods. The results show that the performance of DeepPN is comparable to the published methods. CONCLUSION: The experimental results show that DeepPN can effectively capture potential hidden features in RBPs and use these features for effective prediction of binding sites.