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Subject: search.filters.subject.Convolutional neural networks

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    Towards asteroid detection in microlensing surveys with deep learning
    (Elsevier B.V., 2023-01-30) Cowan P; Bond IA; Reyes NH
    Asteroids are an indelible part of most astronomical surveys though only a few surveys are dedicated to their detection. Over the years, high cadence microlensing surveys have amassed several terabytes of data while scanning primarily the Galactic Bulge and Magellanic Clouds for microlensing events and thus provide a treasure trove of opportunities for scientific data mining. In particular, numerous asteroids have been observed by visual inspection of selected images. This paper presents novel deep learning-based solutions for the recovery and discovery of asteroids in the microlensing data gathered by the MOA project. Asteroid tracklets can be clearly seen by combining all the observations on a given night and these tracklets inform the structure of the dataset. Known asteroids were identified within these composite images and used for creating the labelled datasets required for supervised learning. Several custom CNN models were developed to identify images with asteroid tracklets. Model ensembling was then employed to reduce the variance in the predictions as well as to improve the generalization error, achieving a recall of 97.67%. Furthermore, the YOLOv4 object detector was trained to localize asteroid tracklets, achieving a mean Average Precision (mAP) of 90.97%. These trained networks will be applied to 16 years of MOA archival data to find both known and unknown asteroids that have been observed by the survey over the years. The methodologies developed can be adapted for use by other surveys for asteroid recovery and discovery.
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    DeepCAC: a deep learning approach on DNA transcription factors classification based on multi-head self-attention and concatenate convolutional neural network
    (BioMed Central Ltd, 2023-09-18) Zhang J; Liu B; Wu J; Wang Z; Li J
    Understanding gene expression processes necessitates the accurate classification and identification of transcription factors, which is supported by high-throughput sequencing technologies. However, these techniques suffer from inherent limitations such as time consumption and high costs. To address these challenges, the field of bioinformatics has increasingly turned to deep learning technologies for analyzing gene sequences. Nevertheless, the pursuit of improved experimental results has led to the inclusion of numerous complex analysis function modules, resulting in models with a growing number of parameters. To overcome these limitations, it is proposed a novel approach for analyzing DNA transcription factor sequences, which is named as DeepCAC. This method leverages deep convolutional neural networks with a multi-head self-attention mechanism. By employing convolutional neural networks, it can effectively capture local hidden features in the sequences. Simultaneously, the multi-head self-attention mechanism enhances the identification of hidden features with long-distant dependencies. This approach reduces the overall number of parameters in the model while harnessing the computational power of sequence data from multi-head self-attention. Through training with labeled data, experiments demonstrate that this approach significantly improves performance while requiring fewer parameters compared to existing methods. Additionally, the effectiveness of our approach  is validated in accurately predicting DNA transcription factor sequences.
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    A Performance-Optimized Deep Learning-based Plant Disease Detection Approach for Horticultural Crops of New Zealand
    (Institute of Electrical and Electronics Engineers, 23/08/2022) Saleem MH; Potgieter J; Arif K
    Deep learning-based plant disease detection has gained significant attention from the scientific community. However, various aspects of real horticultural conditions have not yet been explored. For example, the disease should be considered not only on leaves, but also on other parts of plants, including stems, canes, and fruits. Furthermore, the detection of multiple diseases in a single plant organ at a time has not been performed. Similarly, plant disease has not been identified in various crops in the complex horticultural environment with the same optimized/modified model. To address these research gaps, this research presents a dataset named NZDLPlantDisease-v1, consisting of diseases in five of the most important horticultural crops in New Zealand: kiwifruit, apple, pear, avocado, and grapevine. An optimized version of the best obtained deep learning (DL) model named region-based fully convolutional network (RFCN) has been proposed to detect plant disease using the newly generated dataset. After finding the most suitable DL model, the data augmentation techniques were successively evaluated. Subsequently, the effects of image resizers with interpolators, weight initializers, batch normalization, and DL optimizers were studied. Finally, performance was enhanced by empirical observation of position-sensitive score maps and anchor box specifications. Furthermore, the robustness/practicality of the proposed approach was demonstrated using a stratified k-fold cross-validation technique and testing on an external dataset. The final mean average precision of the RFCN model was found to be 93.80%, which was 19.33% better than the default settings. Therefore, this research could be a benchmark step for any follow-up research on automatic control of disease in several plant species.