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    Genetic variation in surface temperature measured using infra-red thermography and genetic associations with production traits in grazing dairy cattle
    (Taylor and Francis Group, 2024-01-01) Douie JS; Lopez-Villalobos N; Dukkipati VSR; Udy G
    Increasing global temperatures and the incidence of extreme weather conditions will result in heat stress becoming a greater issue in production animals. Genetic selection and breeding for heat-tolerant animals have been promoted as a possible mitigation strategy in dairy cattle. The objectives of this study were to obtain in-field skin temperature measurements of the eye, muzzle and udder using infra-red thermography to examine the genetic variation in skin temperature within cows of a dairy herd and to estimate the genetic correlations between skin temperature and production traits. Thermal images and herd test records were obtained for the dairy herd at Massey University’s dairy farm 1. Estimates of (co)variances were obtained using the JWAS program with univariate and bivariate animal models. The heritability estimates for the eye, muzzle and udder temperature were low to moderate at 0.20, 0.24 and 0.39, respectively. All genetic correlations between production and temperature traits were positive except for eye temperature with milk yield and protein yield which was negative and weak. These results indicate that it may be possible to select for a greater skin temperature, however, these results need to be validated using a larger sample size.
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    Genetic and phenotypic relationships between ewe reproductive performance and wool and growth traits in Uruguayan Ultrafine Merino sheep.
    (Oxford University Press on behalf of the American Society of Animal Science, 2023-03-07) Ramos Z; Garrick DJ; Blair HT; De Barbieri I; Ciappesoni G; Montossi F; Kenyon PR
    This study reports genetic parameters for yearling and adult wool and growth traits, and ewe reproductive performance. Data were sourced from an Uruguayan Merino flock involved in a long-term selection program focused on reduced fiber diameter (FD), and increased clean fleece weight (CFW) and live weight (LW). Pedigree and performance data from approximately 5,700 mixed-sex yearling lambs and 2,000 mixed-age ewes born between 1999 and 2019 were analyzed. The number of records ranged from 1,267 to 5,738 for yearling traits, and from 1,931 to 7,079 for ewe productive and reproductive performance. Data on yearling and adult wool traits, LW and body condition score (BCS), yearling eye muscle area (Y_EMA), and fat thickness (Y_FAT), and several reproduction traits were analyzed. The genetic relationships between FD and reproduction traits were not different from zero. Moderate unfavorable genetic correlations were found between adult CFW and ewe lifetime reproduction traits (-0.34 ± 0.08 and -0.33 ± 0.09 for the total number of lambs weaned and total lamb LW at weaning, respectively). There were moderate to strong positive genetic correlations between yearling LW and all reproduction traits other than ewe-rearing ability (-0.08 ± 0.11) and pregnancy rate (0.18 ± 0.08). The genetic correlations between Y_EMA and reproduction traits were positive and ranged from 0.15 to 0.49. Moderate unfavorable genetic correlations were observed between yearling FD and Y_FAT and between adult FD and BCS at mating (0.31 ± 0.12 and 0.23 ± 0.07, respectively). The genetic correlations between adult fleece weight and ewe BCS at different stages of the cycle were negative, but generally not different from zero. This study shows that selection for reduced FD is unlikely to have any effect on reproduction traits. Selection for increased yearling LW and Y_EMA will improve ewe reproductive performance. On the other hand, selection for increased adult CFW will reduce ewe reproductive performance, whereas selection for reduced FD will negatively impact body fat levels. Although unfavorable genetic relationships between wool traits and both FAT and ewe reproductive performance existed, simultaneous improvements in the traits would occur using appropriately designed indexes.
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    Estimates of Genetic Parameters for Milk, the Occurrence of and Susceptibility to Clinical Lameness and Claw Disorders in Dairy Goats
    (MDPI (Basel, Switzerland), 2023-04-17) Jaques N; Turner S-A; Vallée E; Heuer C; Lopez-Villalobos N; Davis ME; Bagnicka E
    The New Zealand goat industry accesses niche markets for high-value products, mainly formula for infants and young children. This study aimed to estimate the genetic parameters of occurrence and susceptibility of clinical lameness and selected claw disorders and establish their genetic associations with milk production traits. Information on pedigree, lameness, claw disorders, and milk production was collected on three farms between June 2019 and July 2020. The dataset contained 1637 does from 174 sires and 1231 dams. Estimates of genetic and residual (co)variances, heritabilities, and genetic and phenotypic correlations were obtained with uni- and bi-variate animal models. The models included the fixed effects of farm and parity, deviation from the median kidding date as a covariate, and the random effects of animal and residual error. The heritability (h2) estimates for lameness occurrence and susceptibility were 0.07 and 0.13, respectively. The h2 estimates for claw disorder susceptibilities ranged from 0.02 to 0.23. The genotypic correlations ranged from weak to very strong between lameness and milk production traits (-0.94 to 0.84) and weak to moderate (0.23 to 0.84) between claw disorder and milk production traits.
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    Genetic Parameters for Growth, Ultrasound and Carcass Traits in New Zealand Beef Cattle and Their Correlations with Maternal Performance
    (MDPI, (Basel, Switzerland), 2021-12-23) Weik F; Hickson RE; Morris ST; Garrick DJ; Archer JA
    Research has shown that enhancing finishing performance in beef cows is feasible; however, any adverse impact of selection strategies for finishing performance on the performance of the maternal herd should be taken into account. The aim of this research was to examine the inheritance of growth, ultrasound and carcass traits in finishing beef cattle and to evaluate their correlations with maternal performance traits. Data were collected from a nationwide progeny test on commercial New Zealand hill country farms comprising a total of 4473 beef cows and their progeny. Most finishing traits were moderately to highly heritable (0.28-0.58) with the exception of meat or fat colour and ossification (0.00-0.12). Ultrasound scan traits had high genetic correlations with corresponding traits measured at slaughter (rg = 0.53-0.95) and may be used as a selection tool for improved genetic merit of the beef carcass. Fat content determined via ultrasound scanning in the live animal or at slaughter in finishing cattle is positively genetically correlated with rebreeding performance (rg = 0.22-0.39) in female herd replacements and negatively correlated with mature cow live weight (rg = -0.40 to -0.19). Low-magnitude associations were observed between the genetic merit for carcass fat traits with body condition in mature cows.
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    Estimation of genetic parameters and individual and maternal breed, heterosis, and recombination loss effects for production and fertility traits of spring-calved cows milked once daily or twice daily in New Zealand
    (Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association, 2023-01) Jayawardana JMDR; Lopez-Villalobos N; Hickson RE; McNaughton LR
    The objectives of this study were to estimate genetic parameters and individual and maternal breed, heterosis, and recombination loss effects for milk production and fertility traits of Holstein Friesian (F), Jersey (J), and crossbred Holstein Friesian and Jersey (F × J) cows milked once daily (OAD) or twice daily (TAD) in New Zealand. Data on 278,776 lactations from 30,217 OAD and 170,680 TAD milking cows across 644 spring-calving herds were available. Genetic parameters and individual and maternal breed, heterosis, and recombination loss estimates were obtained from univariate animal models. Heritability and repeatability estimates for milk production, milk composition, and fertility traits were consistent across the milking frequencies. Heritability estimates for yields of milk, fat, protein, and lactose varied between 0.21 and 0.29 in OAD and TAD. Heritability estimates for fertility traits ranged from 0.01 to 0.08 in both populations, and estimates were slightly greater in TAD than OAD milking cows. In both milking populations, individual breed effects for yields were in favor of F cows; however, maternal breed effects for yields were in favor of J dams. Jersey cows were more fertile than the F cows in both milking populations, but maternal breed effects for fertility traits were in favor of F dams. Individual heterosis effects were favorable for all traits and were consistent across milking regimens. Crossbred F × J cows had significantly shorter intervals from start of mating to first service and from start of mating to conception, and a higher proportion of 3-wk submission, 3-wk in calf, and 3-wk calving relative to the average of purebred F and J cows. Recombination loss effects were not always unfavorable for production and fertility traits, but most estimates were small with larger standard errors. Favorable maternal heterosis effects were associated with production traits in both milking systems, but maternal heterosis effects were less likely to influence reproductive performance.
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    Water-use efficiency in perennial ryegrass (Lolium perenne L.) : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Plant Science at Massey University, Manawatu, New Zealand
    (Massey University, 2021) Weerarathne, Lekamalage Visna Yahani
    Knowledge of genetic and physiological bases of drought responses and stress tolerance properties of pasture plants is an integral part of designing efficient pasture improvement programs to combat the consequences of climate change. However, experimental evidence or theoretical analyses on that aspect is sparse in the literature. Therefore, considering wider applications, high economic importance, and acknowledged poor tolerance of (Lolium perenne L.; PRG) to drought, the main aim of this research was to evaluate morpho-physiological trait responses that are linked to water-use efficiency (WUE) in different PRG populations from different sources in simulated summer drought cycles under a controlled environment. This study also included a quantitative genetic analysis conducted on the key traits to ascertain which traits are under genetic control for future breeding purposes. Experiment 1 screened single potted PRG genotypes from three commercial cultivars with industry reputation for persistence for natural differences in morpho-physiological traits related to water use (WU) under simulated drought. Large within-population variation was observed for the measured traits which included, among others, WUE (g WU/g plant dry matter); shoot dry weight, SDW; leaf osmotic potential, OP; leaf relative water content; predawn leaf water potential; root dry weight at 20–50 cm depth, RDWD; gravimetric soil moisture at 30–40 cm depth, SMCD; post-cutting regrowth. Principal component analysis (PCA) identified important trait associations contributing to high WUE (i.e. WUE-OP-RDWD trait association) and one related to higher SDW together with ‘SMCD conservation’ indicative of ‘true WUE’ was used to make a divergent selection of 20 high- and 15 low-WUE genotypes (HWUE and LWUE, respectively). Experiments 2 and 3 were conducted simultaneously using the same methodology as Experiment 1 and inter-randomised in the same glasshouse space. Experiment 2 retested clones of HWUE and LWUE plants selected in Experiment 1 for consistency of trait expression across the two consecutive growing seasons, and also collected data for additional traits. Results confirmed that the key trait associations identified in Experiment 1 were almost identically expressed in Experiment 2. From data on additional traits, it was established that the accumulation of high molecular weight sugars in the shoots significantly contribute to ‘true WUE’ of a subset of PRG genotypes but, with the less involvement of gas exchange data under the conditions tested. It is speculated that enhanced mesophyll conductance of CO2 might underlie this important trait association. However, the large majority of genotypes exhibited a ‘SMCD-depleting’ trait association of WUE with improved gas exchange and maximum quantum efficiency of PSII, demonstrating late A.R. Blum’s theory of WUE. Thus, selection of PRG for drought tolerance should consider yield and soil moisture data together to establish the most appropriate category of WUE trait association in improved cultivars. Experiment 3 investigated drought response trait associations in two further populations: a group of elite plants from a commercial plant breeder’s breeding program (CBL) and a PRG germplasm line derived from crossing Mediterranean and Middle Eastern seed accessions (MMEL) compared with those from the HWUE selection. PCA results showed that the major trait associations found in the yield and water relations data of elite subsets of CBL closely followed those of the HWUE selection, but elite MMEL plants exhibited typical summer dormancy characteristics where the average SDW of MMEL was 40% of lower than that of the CBL plants. Results further suggested that the company field evaluation system could benefit from the consideration of water relations traits, including WUE and associated traits like OP, as externally-measured selection traits for PRG drought tolerance. Experiment 4 evaluated quantitative genetic parameters of the key traits using the same methodology from Experiment 1 in a breeding population of 36 ‘half-sib (HS) families’ under both stressed and non-stressed conditions. There were significant estimates of among- and within-HS family genetic variances, narrow-sense heritability, and predicted genetic gain estimates for the key traits, indicating high genetic potential of each trait for breeding purposes under the conditions tested. However, the correlated response to selection of each trait pair comprising highly genetically correlated morpho-physiological traits with WUE was lower than that gain from the single-trait selection, accommodating further research questions on the efficacy of indirect and multi-trait selection of key traits. Based on the current results, it was found that the direct selection of PRG for WUE or concurrent selection for OP, RDWD, SMCD, and SDW or RGS traits under drought is advisable. Furthermore, significant quantitative genetic parameters estimated for WUE under non-stressed conditions together with high genetic correlation observed for WUE between stressed and non-stressed conditions suggested that a PRG population can potentially be selected for this trait at early growth stages or before imposition of water deficit.