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Subject: search.filters.subject.07 Agricultural and Veterinary Sciences

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    A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease.
    (2023-02) Wierenga JR; Morgan KJ; Hunter S; Taylor HS; Argilla LS; Webster T; Dubrulle J; Jorge F; Bostina M; Burga L; Holmes EC; McInnes K; Geoghegan JL
    Yellow-eyed penguins (Megadyptes antipodes), or hoiho in te reo Māori, are predicted to become extinct on mainland Aotearoa New Zealand in the next few decades, with infectious disease a significant contributor to their decline. A recent disease phenomenon termed respiratory distress syndrome (RDS) causing lung pathology has been identified in very young chicks. To date, no causative pathogens for RDS have been identified. In 2020 and 2021, the number of chick deaths from suspected RDS increased four- and five-fold, respectively, causing mass mortality with an estimated mortality rate of >90%. We aimed to identify possible pathogens responsible for RDS disease impacting these critically endangered yellow-eyed penguins. Total RNA was extracted from tissue samples collected during post-mortem of 43 dead chicks and subject to metatranscriptomic sequencing and histological examination. From these data we identified a novel and highly abundant gyrovirus (Anelloviridae) in 80% of tissue samples. This virus was most closely related to Gyrovirus 8 discovered in a diseased seabird, while other members of the genus Gyrovirus include Chicken anaemia virus, which causes severe disease in juvenile chickens. No other exogenous viral transcripts were identified in these tissues. Due to the high relative abundance of viral reads and its high prevalence in diseased animals, it is likely that this novel gyrovirus is associated with RDS in yellow-eyed penguin chicks.
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    CHANGES IN THE LEVELS OF THEILERIA ORIENTALIS IKEDA TYPE INFECTION IN HAEMAPHYSALIS LONGICORNIS NYMPHS OVER A SIX-MONTH PERIOD.
    (1/09/2021) Zhao Y; Lawrence KE; Minor M; Gedye K; Wang B; Pomroy W; Potter M
    This study aimed to investigate whether the infection intensity of Theileria orientalis Ikeda type organisms within Haemaphysalis longicornis larvae and nymph stages fluctuated over 6 mo after feeding as larvae on infected calves in the field. Naïve larvae, hatched from eggs, were fed on infected calves for 5 days while contained within cotton socks glued over the calves' ears. Larvae were first sampled immediately post-feeding and then sampled every 3 wk for 23 wk in total, after molting to nymphs. All larvae and nymphs were tested for T. orientalis Ikeda organisms using quantitative PCR. The qPCR results showed that the infection intensity of Haemaphysalis longicornis larvae and nymphs was not constant over the sampling period, and after initially dropping after molting to nymphs, it then rose with fasting to a maximum at 17 and 23 wk post-feeding. The significant rise in T. orientalis Ikeda organisms observed at 23 wk postfeeding may explain why more severe clinical cases of bovine theileriosis in New Zealand are seen in the spring when nymphs are the predominant instar questing.
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    BfpI, BfpJ, and BfpK Minor Pilins Are Important for the Function and Biogenesis of Bundle-Forming Pili Expressed by Enteropathogenic Escherichia coli
    (American Society for Microbiology, 1/03/2016) Nisa S; Martinez de la Peña CF; De Masi L; Mulvey G; Tong J; Donnenberg MS; Armstrong GD
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    The population genetic structure of the urchin Centrostephanus rodgersii in New Zealand with links to Australia
    (1/09/2021) Thomas LJ; Liggins L; Banks SC; Beheregaray LB; Liddy M; McCulloch GA; Waters JM; Carter L; Byrne M; Cumming RA; Lamare MD
    The diadematid sea urchin Centrostephanus rodgersii occurs in Australia and New Zealand and has undergone recent southward range extension in Australia as a result of regional warming. Clarifying the population genetic structure of this species across its New Zealand range would allow a better understanding of recent and future mechanisms driving range changes in the species. Here, we use microsatellite DNA data to assess connectivity and genetic structure in 385 individuals from 14 locations across the Australian and New Zealand ranges of the species. We detected substantial genetic differentiation among C. rodgersii populations from Australia and New Zealand. However, the population from Port Stephens (located north of Newcastle), Australia, strongly clustered with New Zealand samples. This suggests that the New Zealand populations recently originated from this area, likely via larval transport in the Tasman Front flow that arises in this region. The weak population genetic structure and relatively low genetic diversity detected in New Zealand (global Fst = 0.0021) relative to Australia (global Fst = 0.0339) is consistent with the former population’s inferred history of recent climate-driven expansion. Population-level inbreeding is low in most populations, but were higher in New Zealand (global Fis = 0.0833) than in Australia (global Fis = 0.0202), suggesting that self-recruitment is playing an increasingly important role in the New Zealand region. Our results suggest that C. rodgersii is likely to spread southwards as ocean temperatures increase; therefore, it is crucial that researchers develop a clearer understanding of how New Zealand ecosystems will be reshaped by this species (and others) under climate change.
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    Papillomaviruses in dogs and cats.
    (2017-07) Munday JS; Thomson NA; Luff JA
    Papillomaviruses (PVs) cause disease in both dogs and cats. In dogs, PVs are thought to cause oral papillomatosis, cutaneous papillomas and canine viral pigmented plaques, whereas PVs have been rarely associated with the development of oral and cutaneous squamous cell carcinomas in this species. In cats, PVs are currently thought to cause oral papillomas, feline viral plaques, Bowenoid in situ carcinomas and feline sarcoids. Furthermore, there is increasing evidence that PVs may also be a cause of cutaneous squamous cell carcinomas and basal cell carcinomas in cats. These diseases are discussed in this review. Additionally, there is a brief overview of PV biology, including how these viruses cause disease. Diagnostic techniques and possible methods to prevent PV infection are also discussed.
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    Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved
    (Elsevier Ltd, 2020-08) Hoban S; Bruford M; D'Urban Jackson J; Lopes-Fernandes M; Heuertz M; Hohenlohe PA; Paz-Vinas I; Sjögren-Gulve P; Segelbacher G; Vernesi C; Aitken S; Bertola LD; Bloomer P; Breed M; Rodríguez-Correa H; Funk WC; Grueber CE; Hunter ME; Jaffe R; Liggins L; Mergeay J; Moharrek F; O'Brien D; Ogden R; Palma-Silva C; Pierson J; Ramakrishnan U; Simo-Droissart M; Tani N; Waits L; Laikre L
    The 196 parties to the Convention on Biological Diversity (CBD) will soon agree to a post-2020 global framework for conserving the three elements of biodiversity (genetic, species, and ecosystem diversity) while ensuring sustainable development and benefit sharing. As the most significant global conservation policy mechanism, the new CBD framework has far-reaching consequences- it will guide conservation actions and reporting for each member country until 2050. In previous CBD strategies, as well as other major conservation policy mechanisms, targets and indicators for genetic diversity (variation at the DNA level within species, which facilitates species adaptation and ecosystem function) were undeveloped and focused on species of agricultural relevance. We assert that, to meet global conservation goals, genetic diversity within all species, not just domesticated species and their wild relatives, must be conserved and monitored using appropriate metrics. Building on suggestions in a recent Letter in Science (Laikre et al., 2020) we expand argumentation for three new, pragmatic genetic indicators and modifications to two current indicators for maintaining genetic diversity and adaptive capacity of all species, and provide guidance on their practical use. The indicators are: 1) the number of populations with effective population size above versus below 500, 2) the proportion of populations maintained within species, 3) the number of species and populations in which genetic diversity is monitored using DNA-based methods. We also present and discuss Goals and Action Targets for post-2020 biodiversity conservation which are connected to these indicators and underlying data. These pragmatic indicators and goals have utility beyond the CBD; they should benefit conservation and monitoring of genetic diversity via national and global policy for decades to come.
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    The aetiology of wobbly possum disease: Reproduction of the disease with purified nidovirus.
    (2016-04) Giles J; Perrott M; Roe W; Dunowska M
    The objective of this study was to investigate a role of a recently discovered marsupial nidovirus in the development of a neurological disease, termed wobbly possum disease (WPD), in the Australian brushtail possum (Trichosurus vulpecula). Four possums received 1 mL of a standard inoculum that had been prepared from tissues of WPD-affected possums, 4 possums received 1.8 mL (1 × 10(6) TCID50) of a cell lysate from inoculated cultures, and 4 possums received 1 mL (× 10(7) TCID50) of a purified WPD isolate. All but one possum that received infectious inocula developed neurological disease and histopathological lesions characteristic for WPD. High levels of viral RNA were detected in livers from all possums that received infectious inocula, but not from control possums. Altogether, our data provide strong experimental evidence for the causative involvement of WPD virus in development of a neurological disease in infected animals.
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    Different effects of grazing and nitrogen addition on ecosystem multifunctionality are driven by changes in plant resource stoichiometry in a typical steppe
    (5/08/2022) Li L; He XZ; Zhang X; Hu J; Wang M; Wang Z; Hou F
    Purpose: Herbivore grazing and nitrogen (N) input may alter the multiple ecosystem functions (i.e., multifunctionality, hereafter) associated with carbon (C), N, and phosphorus (P) cycling. Most studies on variations in plant diversity, soil biotic or abiotic factors, and linkages to ecosystem functions have focused on grazing or N enrichment alone. Few studies have combined these two factors to explore the role of plant resource stoichiometry (C:N:P ratios) in ecosystem multifunctionality (EMF) control. Here, we evaluated the direct and indirect effects of stocking rate (0, 2.7, 5.3, and 8.7 sheep ha− 1) and N addition rate (0, 5, 10, and 20 g N m− 2 yr− 1) on a range of ecosystem functions and EMF via changing plant diversity, soil pH and plant resource stoichiometry in a typical steppe on the Loess Plateau. Results: We found that increasing stocking rate and interaction between grazing and N addition significantly decreased EMF, while increasing N addition rate significantly promoted EMF. Grazing decreased soil NH4+-N, soil NO3−-N, aboveground biomass, and plant C, N, and P pools, but increased soil total N and P at 8.7 and 5.3 sheep ha− 1, respectively. N addition increased soil NH4+-N, NO3−-N, and total P. Plant aboveground biomass, and plant C, N, and P pools increased at the lower N addition rate (≤ 5 g N m− 2 yr− 1) under grazing. The structural equation models indicated that (1) EMF was driven by the direct effects of grazing and the indirect effects of grazing on plant resource stoichiometry and soil pH; (2) EMF increased with increasing N addition rates, but such positive response of EMF to increasing N addition rates was alleviated at high levels of plant resource stoichiometry and diversity; and (3) the indirect effects of plant diversity induced by grazing and N addition had moderate effects on EMF via the variations of plant resource stoichiometry. Conclusions: This study demonstrated grazing and N addition had contrasting effects on ecosystem multifunctionality in a typical steppe, and highlighted the capacity of plant diversity in balancing plant elements that serve as a key mechanism in the maintenance of EMF in response to intensive grazing and N enrichment.
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    Environmental input-output analysis of the New Zealand dairy industry
    (Inderscience Enterprises Ltd., 2/01/2012) Flemmer CL; Nepomuceno-Silo, J
    This work presents data and analysis quantifying the total (direct and indirect) resource use and outputs (products and pollutants) of the New Zealand dairy industry for the year April 1997 to March 1998. It also identifies those sectors supplying the dairy industry which make significant indirect contributions to its total inputs and outputs. Although this data is 14 years old, it is the only large-scale, detailed data available. Further, more modern data can be compared with this baseline data. Comparison with the other major New Zealand food and fibre sectors shows that the dairy farming sector has the highest total water consumption and the highest total effluent. It also has high total land use, electricity use and production of animal methane. The dairy processing sector is water and fuel intensive and has high total water effluent and greenhouse gas emissions. The high resource use and pollutants have to be weighed against the enormous economic value of the dairy sectors.
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    Unilateral perivertebral fibrosis associated with lordosis, kyphosis and scoliosis (LKS) in farmed Chinook salmon in New Zealand.
    (27/10/2016) Munday JS; Perrott MR; Symonds JE; Walker SP; Lovett B; Preece MA; Davie PS
    Vertebral column lordosis, kyphosis and scoliosis (LKS) can result in downgrading of farmed Chinook salmon Oncorhynchus tshawytscha in New Zealand. No cause of LKS has been identified. Radiography and histology were used to quantify LKS and perivertebral fibrosis in 27 fish with LKS visible at harvest and 30 visually normal fish from 3 New Zealand farms. Radiographic LKS was present in all 27 fish with LKS and in 18 of 30 fish without visible LKS. Quantification of the radiographic severity revealed significantly higher radiographic severity scores in fish with visible LKS (mean ± SD = 5.89 ± 2.41) than in fish with no visible, but radiographic LKS (1.44 ± 0.86, p < 0.001). The most frequent histological finding was unilateral perivertebral fibrosis that often extended into the horizontal septum and adjacent myomeres resulting in separation or loss of myocytes. Fibrosis was visible in all fish with LKS and in 12 of 30 fish without visible LKS. Fibrosis scores were higher in fish with visible LKS (3.32 ± 1.71) than in fish without visible LKS (0.35 ± 0.57, p < 0.001). The radiographic LKS severity scores were significantly correlated to the fibrosis scores (R2 = 0.59 p < 0.001) in the fish. Histology of other tissues revealed multifocal inflammation within muscle, peripheral connective tissues and myocardium which were considered most likely incidental in these fish. In this study, LKS was consistently and significantly associated with perivertebral fibrosis, suggesting that perivertebral fibrosis is an important process in the development of LKS. Further research to determine the cause of the fibrosis is required.