Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Simple item page
dc.citation.volume6
dc.contributor.authorO'Toole Á
dc.contributor.authorHill V
dc.contributor.authorPybus OG
dc.contributor.authorWatts A
dc.contributor.authorBogoch II
dc.contributor.authorKhan K
dc.contributor.authorMessina JP
dc.contributor.authorCOVID-19 Genomics UK (COG-UK) consortium
dc.contributor.authorNetwork for Genomic Surveillance in South Africa (NGS-SA)
dc.contributor.authorBrazil-UK CADDE Genomic Network
dc.contributor.authorTegally H
dc.contributor.authorLessells RR
dc.contributor.authorGiandhari J
dc.contributor.authorPillay S
dc.contributor.authorTumedi KA
dc.contributor.authorNyepetsi G
dc.contributor.authorKebabonye M
dc.contributor.authorMatsheka M
dc.contributor.authorMine M
dc.contributor.authorTokajian S
dc.contributor.authorHassan H
dc.contributor.authorSalloum T
dc.contributor.authorMerhi G
dc.contributor.authorKoweyes J
dc.contributor.authorGeoghegan JL
dc.contributor.authorde Ligt J
dc.contributor.authorRen X
dc.contributor.authorStorey M
dc.contributor.authorFreed NE
dc.contributor.authorPattabiraman C
dc.contributor.authorPrasad P
dc.contributor.authorDesai AS
dc.contributor.authorVasanthapuram R
dc.contributor.authorSchulz TF
dc.contributor.authorSteinbrück L
dc.contributor.authorStadler T
dc.contributor.authorSwiss Viollier Sequencing Consortium
dc.contributor.authorParisi A
dc.contributor.authorBianco A
dc.contributor.authorGarcía de Viedma D
dc.contributor.authorBuenestado-Serrano S
dc.contributor.authorBorges V
dc.contributor.authorIsidro J
dc.contributor.authorDuarte S
dc.contributor.authorGomes JP
dc.contributor.authorZuckerman NS
dc.contributor.authorMandelboim M
dc.contributor.authorMor O
dc.contributor.authorSeemann T
dc.contributor.authorArnott A
dc.contributor.authorDraper J
dc.contributor.authorGall M
dc.contributor.authorRawlinson W
dc.contributor.authorDeveson I
dc.contributor.authorSchlebusch S
dc.contributor.authorMcMahon J
dc.contributor.authorLeong L
dc.contributor.authorLim CK
dc.contributor.authorChironna M
dc.contributor.authorLoconsole D
dc.contributor.authorBal A
dc.contributor.authorJosset L
dc.contributor.authorHolmes E
dc.contributor.authorSt George K
dc.contributor.authorLasek-Nesselquist E
dc.contributor.authorSikkema RS
dc.contributor.authorOude Munnink B
dc.contributor.authorKoopmans M
dc.contributor.authorBrytting M
dc.contributor.authorSudha Rani V
dc.contributor.authorPavani S
dc.contributor.authorSmura T
dc.contributor.authorHeim A
dc.contributor.authorKurkela S
dc.contributor.authorUmair M
dc.contributor.authorSalman M
dc.contributor.authorBartolini B
dc.contributor.authorRueca M
dc.contributor.authorDrosten C
dc.contributor.authorWolff T
dc.contributor.authorSilander O
dc.contributor.authorEggink D
dc.contributor.authorReusken C
dc.contributor.authorVennema H
dc.contributor.authorPark A
dc.contributor.authorCarrington C
dc.contributor.authorSahadeo N
dc.contributor.authorCarr M
dc.contributor.authorGonzalez G
dc.contributor.authorSEARCH Alliance San Diego
dc.contributor.authorNational Virus Reference Laboratory
dc.contributor.authorSeqCOVID-Spain
dc.contributor.authorDanish Covid-19 Genome Consortium (DCGC)
dc.contributor.authorCommunicable Diseases Genomic Network (CDGN)
dc.contributor.authorDutch National SARS-CoV-2 surveillance program
dc.contributor.authorDivision of Emerging Infectious Diseases (KDCA)
dc.contributor.authorde Oliveira T
dc.contributor.authorFaria N
dc.contributor.authorRambaut A
dc.contributor.authorKraemer MUG
dc.coverage.spatialEngland
dc.date.accessioned2024-01-09T01:47:32Z
dc.date.accessioned2024-07-25T06:42:08Z
dc.date.available2021-09-17
dc.date.available2024-01-09T01:47:32Z
dc.date.available2024-07-25T06:42:08Z
dc.date.issued2021-09-17
dc.description.abstractLate in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.
dc.description.confidentialfalse
dc.format.pagination121-
dc.identifier.author-urlhttps://www.ncbi.nlm.nih.gov/pubmed/34095513
dc.identifier.citationO'Toole Á, Hill V, Pybus OG, Watts A, Bogoch II, Khan K, Messina JP, COVID-19 Genomics UK (COG-UK) consortium , Network for Genomic Surveillance in South Africa (NGS-SA) , Brazil-UK CADDE Genomic Network , Tegally H, Lessells RR, Giandhari J, Pillay S, Tumedi KA, Nyepetsi G, Kebabonye M, Matsheka M, Mine M, Tokajian S, Hassan H, Salloum T, Merhi G, Koweyes J, Geoghegan JL, de Ligt J, Ren X, Storey M, Freed NE, Pattabiraman C, Prasad P, Desai AS, Vasanthapuram R, Schulz TF, Steinbrück L, Stadler T, Swiss Viollier Sequencing Consortium , Parisi A, Bianco A, García de Viedma D, Buenestado-Serrano S, Borges V, Isidro J, Duarte S, Gomes JP, Zuckerman NS, Mandelboim M, Mor O, Seemann T, Arnott A, Draper J, Gall M, Rawlinson W, Deveson I, Schlebusch S, McMahon J, Leong L, Lim CK, Chironna M, Loconsole D, Bal A, Josset L, Holmes E, St George K, Lasek-Nesselquist E, Sikkema RS, Oude Munnink B, Koopmans M, Brytting M, Sudha Rani V, Pavani S, Smura T, Heim A, Kurkela S, Umair M, Salman M, Bartolini B, Rueca M, Drosten C, Wolff T, Silander O, Eggink D, Reusken C, Vennema H, Park A, Carrington C, Sahadeo N, Carr M, Gonzalez G, SEARCH Alliance San Diego , National Virus Reference Laboratory , SeqCOVID-Spain , Danish Covid-19 Genome Consortium (DCGC) , Communicable Diseases Genomic Network (CDGN) , Dutch National SARS-CoV-2 surveillance program , Division of Emerging Infectious Diseases (KDCA) , de Oliveira T, Faria N, Rambaut A, Kraemer MUG. (2021). Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.. Wellcome Open Res. 6. (pp. 121-).
dc.identifier.doi10.12688/wellcomeopenres.16661.2
dc.identifier.eissn2398-502X
dc.identifier.elements-typejournal-article
dc.identifier.issn2398-502X
dc.identifier.number121
dc.identifier.urihttps://mro.massey.ac.nz/handle/10179/70713
dc.languageeng
dc.publisherF1000 Research Limited
dc.publisher.urihttps://wellcomeopenresearch.org/articles/6-121/v2
dc.relation.isPartOfWellcome Open Res
dc.rights(c) 2021 The Author
dc.rightsCC BY 4.0
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectB.1.1.7
dc.subjectB.1.351
dc.subjectN501Y
dc.subjectSARS-CoV-2
dc.subjectair travel
dc.subjectcoronavirus
dc.subjectgenome sequencing
dc.subjectgenomic epidemiology
dc.subjectgenomic surveillance
dc.subjectgenomics
dc.subjectpandemic
dc.subjectsequencing
dc.subjectsurveillance
dc.subjectvirus
dc.titleTracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch
dc.typeJournal article
pubs.elements-id446225
pubs.organisational-groupOther
Files
Original bundle
Now showing 1 - 1 of 1
Thumbnail Image
Name:
446225 PDF.pdf
Size:
2.08 MB
Format:
Adobe Portable Document Format
Description:
Download
Collections
Journal Articles