Journal Articles
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Item Increased growth rate post-weaning affects mammary gene expression of two-year-old ewes during their second pregnancy and lactation(Oxford University Press on behalf of the American Society of Animal Science., 2025-09-18) Haslin E; Herath HMGP; Pain SJ; Gedye KR; Sneddon NW; Wang B; Heiser A; Corner-Thomas RA; Kenyon PR; Morris ST; Blair HTThis study examined the long-term effects of increased growth rates between three and seven months of age on gene expression in the mammary gland of nondairy ewes during their second lactation. A total of 19 twin-bearing, two-year-old ewes that either had an increased growth rate between three and seven months of age (heavy; n = 9; 153 ± 2.2 g/d and 47.9 ± 0.38 kg at breeding) or did not have an increased growth rate (control; n = 10; 127 ± 1.9 g/d and 44.9 ± 0.49 kg at breeding) were selected. Mammary gland biopsies were collected at day 128 of pregnancy and day 30 of lactation to examine the expression of 37 genes involved in mammary cell development and milk fat metabolism using NanoString nCounter technology. Ewes in the heavy group tended to exhibit lower expression (P < 0.05) of acyl-CoA synthetase short-chain family member 1 (ACSS1), a gene critical for mitochondrial acetyl-CoA synthesis, energy production, and milk fat synthesis, and a trend toward (P = 0.11) lower expression of signal transducer and activator of transcription 5A (STAT5A), a regulator of mammary epithelial cell differentiation and survival. These lower expressions suggest potential carry-over effects of increased growth rate between three and seven months of age. However, no phenotypic differences were observed in lamb growth or live weight, and no differences were detected in the expression of downstream target genes or modulators of these pathways, suggesting limited functional impact on mammary gland development and lamb performance outcomes. Further investigations, including a functional assessment of lactation and use of comprehensive transcriptomic analyses, would be needed to understand the effects of increased growth rates between three and seven months of age on ewe mammary function and milk composition.Item Are native shrubs a sustainable alternative to radiata pine on steep slopes? Insights using bioeconomic model for hill country farms in New Zealand(Taylor and Francis Group on behalf of the Royal Society of New Zealand, 2025-05-07) Wangui JC; Millner JP; Kenyon PR; Pain SJ; Tozer PRLimited data on native shrubs has hindered direct comparisons with pine radiata as afforestation options for steep slopes on New Zealand hill country sheep and beef farms. This study updated a native shrub sub-model (NSM) with new research data and developed a radiata pine sub-model (RPM) for integration into a bioeconomic model using STELLA Architect. The model assessed asynchronous afforestation of 10% of effective farm area with either option, comparing impacts on feed supply, sheep dynamics, and farm economics. NSM was updated with growth curve, foliage biomass, and carbon stock data from two New Zealand sites. RPM used literature for growth curve, carbon, and log production data. Simulations included a pasture-only (base) and afforestation with either species at 10% and 20% planting rates. Native shrubs reduced feed supply by 2.5% and 4.0%, while radiata pine reduced it by 7.0% and 7.4% at 10% and 20% planting rates. Reduced feed led to smaller flocks and lower cash flow. Radiata pine generated surplus through carbon and log income, offsetting reduced sheep flock cash flow, while native shrubs did not. Carbon prices of 64.2 and137.4 NZD/NZU would be needed for viability in the best- and worst-case scenarios. Native shrubs are potential land use option on steep slopes but require policy intervention to lower establishment costs and carbon prices.Item Nutritional composition of New Zealand native shrubs edible portions with fodder potential for ruminants(Taylor and Francis Group, 2024-11-13) Wangui JC; Pain SJ; Kenyon PR; Tozer PR; Simmonds G; Millner JPIn New Zealand, willow and poplar are used on hill farms for erosion control and to supplement pasture during low pasture periods. Some native shrubs are browsed by wild herbivores but remain unexplored for farmed ruminants. We evaluated the seasonal nutritional composition of five native New Zealand shrubs (Karamū, Pāpāuma, Karo, Whauwhaupaku, and Houhere) and compared them with willow (Kinuyanagi). Leaf and edible stem were analysed for nutritional composition and in vitro digestibility following AOAC procedures. Results showed that except Houhere, all other native shrubs leaves had lower crude protein (CP) (11 MJ/ kg DM) than Kinuyanagi. Kinuyanagi leaves were comparable to Houhere in ME and CP in spring but had lower CP in summer. Stem nutritional composition was similar across all shrubs. Acid and neutral detergent fibres in edible portions were comparable to those in common pastures, fodder crops, and forages in New Zealand. The findings suggest native shrubs could supplement low ME in summer pastures or winter herbage scarcity, but further research is needed on animal preference and intake.Item Isolation of Aerobic Bacterial Species Associated with Palpable Udder Defects in Non-Dairy Ewes.(MDPI (Basel, Switzerland), 2024-08-09) Zeleke MM; Kenyon PR; Flay KJ; Aberdein D; Pain SJ; Velathanthiri N; Ridler AL; Zecconi AThe objectives of these studies were to identify associations between udder half defects (hard or lump) and bacteria isolated from milk or mammary tissue swabs, to compare with samples from normal udder halves at different physiological time points and to compare bacterial species isolated via milk and swabs of mammary tissue from within the same udder halves. A total of 1054 samples were aseptically collected from each udder half of 199 non-dairy breed (Romney) ewes from three different studies (Study A, n = 77; Study B, n = 74; and Study C, n = 48). Conventional bacterial culture and MALDI-ToF mass spectrometry were used for bacterial identification. Of the 225 samples from which bacteria were isolated, Mannheimia haemolytica and Streptococcus uberis were the dominantly identified species from defective udder halves, whereas coagulase-negative staphylococcus (CNS) species, mostly Staphylococcus simulans and Staphylococcus chromogenes, were more frequently isolated from normal udder halves. The ongoing presence of bacterial species over time was variable, although less frequently identified species showed less stability over time. A very high agreement (91.5%) of bacterial species identified was observed between the mammary tissue swab and udder half milk samples during post-weaning. In summary, palpable udder half defects were associated with bacterial positivity, and the ongoing presence of the bacteria over time was dependent on the species involved. Hence, culling ewes with palpable udder half defects that had more stable bacterial species could contribute to reducing the recurrence of palpable defects or mastitis.Item Increased Dietary Protein to Energy Ratio in Pre-Weaning Lambs Increases Average Daily Gain and Cortical Bone Thickness in the Tibia(MDPI (Basel, Switzerland), 2022-12) Gibson MJ; Adams BR; Back PJ; Dittmer KE; Herath HMGP; Pain SJ; Kenyon PR; Morel PCH; Blair HT; Rogers CWThe objective of this study was to examine if diets differing in crude protein (CP) to metabolizable energy (ME) ratio (CP:ME) pre-weaning altered peripheral quantitative computed tomography (pQCT) measures of bone mass and strength in lambs. The left hind leg of lambs were available at the completion of a trial designed to examine the effect that altering the CP:ME ratio in milk replacer had on growth and body composition of pre-weaned lambs reared artificially. Treatments consisted of either normal commercial milk replacer (CMR, n = 10) containing 240 g/kg CP and 21.89 MJ/kg ME, high protein milk replacer (HPM, n = 9) containing CMR with additional milk protein concentrate to reach 478.7 g/kg CP and 19.15 MJ/kg ME or a mix of normal milk replacer and milk protein concentrate adjusted twice-weekly to match optimal CP:ME requirements (MB, n = 8) based on maintenance plus 300 g/d liveweight gain. At 22 kg live weight, lambs were euthanized and the tibia including the surrounding muscle was collected and scanned using pQCT at the mid-diaphysis. Lambs on the HPM and MB diets had a greater average daily gain (p < 0.01). There were limited differences in bone morphology and muscle mass, though notably the higher protein diets (MB and HPM) were associated with greater cortical thickness (p < 0.05) and, therefore, potentially greater peak bone mass at maturity This finding demonstrates that pre-weaning diets, and the protein content in particular, may influence the developmental potential of long bones and attainment of peak bone mass at maturity.Item The Effect of Artificial Rearing on Live Weight Gain and Bone Morphology of the Tibia in Lambs Prior to Weaning(MDPI (Basel, Switzerland), 2022-03) Gibson MJ; Rogers CW; Pettigrew EJ; Pain SJ; Dittmer KE; Herath HMGP; Back PJ; Leury BJGrowth rates associated with different artificial rearing systems have been thoroughly examined in many species. However, the effect of different rearing systems on bone morphology has not been described. The objective of this study was to examine differences in the bone mass and the relationship of peripheral quantitative computed tomography (pQCT) measures of bone with muscle area of ewe-reared lambs and artificially reared lambs. Lambs were opportunistically collected from a concurrent trial examining changes in ewe mammary glands during lactation. Thirteen lambs were artificially reared while the remaining nine were left on their dam. Measures of stature were taken throughout the six-week trial period. At approximately six weeks of age, the lambs were euthanized and the tibia was collected and scanned using peripheral quantitative computed tomography. Artificially reared lambs had reduced live weight gain and an altered pattern of stature growth. There was no effect of treatment on bone morphology (p > 0.05), but ewe reared lambs had a greater cortical bone content to muscle area ratio than artificially reared lambs (0.06 vs. 0.15, respectively). Differences in growth between ewe reared lambs and artificially reared lambs emphasizes the importance of adequate preweaning nutrition for livestock production systems that routinely use artificial rearing systems.Item Assessment of Changes in Udder Half Defects over Time in Non-Dairy Ewes(MDPI (Basel, Switzerland), 2023-02-21) Zeleke MM; Flay KJ; Kenyon PR; Aberdein D; Pain SJ; Ridler AL; D’Alessandro AGA total of 1039 non-dairy breed (Romney) ewes were enrolled in two studies to assess the changes in udder half defect status (hard, lump, or normal) over time and to predict the risk of future udder half defect occurrence. In the first study (study A), udder halves of 991 ewes were assessed utilizing a standardized udder palpation method and scored four times a year, for two successive years (pre-mating, pre-lambing, docking, and weaning). The second study (study B) assessed the udder halves at pre-mating, and at six weekly intervals in the first six weeks of lactation in 46 ewes that had defective and normal udder halves. Udder half defect change over time was visualized via lasagna plots, and multinomial logistic regression was used to predict the risk or probability of udder half defect occurrence. In the first study, the highest occurrence of udder halves categorised as hard was observed at either pre-mating or docking. Udder halves categorised as lump had their highest occurrence at either docking or weaning. Udder halves detected with a defect (hard or lump) at pre-mating were more likely (RRR: 6.8 to 1444) to be defective (hard or lump) at future examinations (pre-lambing, docking, or weaning) within the same year or pre-mating the following year, compared to udder halves categorised as normal. In the second study, the change of udder half defect type over the first six weeks of lactation was variable. However, it was observed that the udder half defects, particularly udder halves categorised as hard, decreased during lactation. Failure to express milk in udder halves in early lactation was associated with a higher occurrence and persistency of udder half defects. In conclusion, the occurrence of diffuse hardness or lumps in an udder half changed over time, and the risk of future occurrence of a defect was higher in udder halves previously categorised as either hard or lump. Hence, it is recommended that farmers identify and cull ewes with udder halves categorised as hard and lump.Item Bioeconomic Modelling to Assess the Impacts of Using Native Shrubs on the Marginal Portions of the Sheep and Beef Hill Country Farms in New Zealand (article)(MDPI (Basel, Switzerland), 2021-10-18) Wangui JC; Kenyon PR; Tozer PR; Millner JP; Pain SJNew Zealand hill country sheep and beef farms contain land of various slope classes. The steepest slopes have the lowest pasture productivity and livestock carrying capacity and are the most vulnerable to soil mass movements. A potential management option for these areas of a farm is the planting of native shrubs which are browsable and provide erosion control, biodiversity, and a source of carbon credits. A bioeconomic whole farm model was developed by adding a native shrub sub-model to an existing hill country sheep and beef enterprise model to assess the impacts on feed supply, flock dynamics, and farm economics of converting 10% (56.4 hectares) of the entire farm, focusing on the steep slope areas, to native shrubs over a 50-year period. Two native shrub planting rates of 10% and 20% per year of the allocated area were compared to the status quo of no (0%) native shrub plantings. Mean annual feed supply dropped by 6.6% and 7.1% causing a reduction in flock size by 10.9% and 11.6% for the 10% and 20% planting rates, respectively, relative to 0% native shrub over the 50 years. Native shrub expenses exceeded carbon income for both planting rates and, together with reduced income from sheep flock, resulted in lower mean annual discounted total sheep enterprise cash operating surplus for the 10% (New Zealand Dollar (NZD) 20,522) and 20% (NZD 19,532) planting scenarios compared to 0% native shrubs (NZD 22,270). All planting scenarios had positive Net Present Value (NPV) and was highest for the 0% native shrubs compared to planting rates. Break-even carbon price was higher than the modelled carbon price (NZD 32/ New Zealand Emission Unit (NZU)) for both planting rates. Combined, this data indicates planting native shrubs on 10% of the farm at the modelled planting rates and carbon price would result in a reduction in farm sheep enterprise income. It can be concluded from the study that a higher carbon price above the break-even can make native shrubs attractive in the farming system.Item In Vitro Fermentation of Browsable Native Shrubs in New Zealand(MDPI (Basel, Switzerland), 2022-08-10) Wangui JC; Millner JP; Kenyon PR; Tozer PR; Morel PCH; Pain SJInformation on the nutritive value and in vitro fermentation characteristics of native shrubs in New Zealand is scant. This is despite their potential as alternatives to exotic trees and shrubs for supplementary fodder, and their mitigation of greenhouse gases and soil erosion on hill-country sheep and beef farms. The objectives of this study were to measure the in vitro fermentation gas production, predict the parameters of the in vitro fermentation kinetics and estimate the in vitro fermentation of volatile fatty acids (VFA), microbial biomass (MBM), and greenhouse gases of four native shrubs ( Coprosma robusta, Griselinia littoralis, Hoheria populnea, and Pittosporum crassifolium) and an exotic fodder tree species, Salix schwerinii. The total in vitro gas production was higher (p < 0.05) for the natives than for the S. schwerinii. A prediction using the single-pool model resulted in biologically incorrect negative in vitro total gas production from the immediately soluble fraction of the native shrubs. However, the dual pool model better predicted the in vitro total gas production and was in alignment with the measured in vitro fermentation end products. The in vitro VFA and greenhouse gas production from the fermentation of leaf and stem material was higher (p < 0.05), and the MBM lower (p < 0.05), for the native shrubs compared to the S. schwerinii. The lower in vitro total gas production, VFA, and greenhouse gases production and higher MBM of the S. schwerinii may be explained by the presence of condensed tannins (CT), although this was not measured and requires further study. In conclusion, the results from this study suggest that when consumed by ruminant livestock, browsable native shrubs can provide adequate energy and microbial protein, and that greenhouse-gas production from these species is within the ranges reported for typical New Zealand pastures.Item Growth and Body Composition of Artificially-Reared Lambs Exposed to Three Different Rearing Regimens.(24/11/2021) Herath HMGP; Pain SJ; Kenyon PR; Blair HT; Morel PCHThis study was designed to investigate the influence of pellet fibre level, milk replacer composition and age at weaning on growth and body composition of lambs reared artificially. Romney ram lambs were randomly allocated to one of three rearing treatments; HFP57: commercial milk replacer to 57 days of age, and high fibre concentrate pellets; HFP42: commercial milk replacer with early weaning at 42 days of age, and high fibre concentrate pellets; LFP42: high protein milk replacer from 2-16 days of age followed by commercial milk replacer with early weaning at 42 days of age, and low fibre concentrate pellets. Lambs were slaughtered at 57 days of age. Overall average daily liveweight gain of lambs did not differ (p > 0.05) between treatments. Dressing out percentage, carcass weight, empty small intestine and omental fat were higher (p < 0.05) in HFP57 than in both HFP42 and LFP42 lambs. HFP42 and LFP42 lambs had heavier (p < 0.05) empty rumen weights. Whole body protein content was higher (p < 0.05) in HFP42 lambs compared to both HFP57 and LFP42 lambs. Fat content and daily fat deposition were greater (p < 0.05) in HFP57 lambs than HFP42 and LFP42 lambs. Weaning lambs at 42 days of age with provision of either low or high fibre concentrate pellets, resulted in similar growth rates, reduced whole body fat deposition and was a more cost-effective rearing regimen.