Journal Articles

Permanent URI for this collectionhttps://mro.massey.ac.nz/handle/10179/7915

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    Artificial Intelligence-Enabled DDoS Detection for Blockchain-Based Smart Transport Systems.
    (MDPI (Basel, Switzerland), 2021-12-22) Liu T; Sabrina F; Jang-Jaccard J; Xu W; Wei Y
    A smart public transport system is expected to be an integral part of our human lives to improve our mobility and reduce the effect of our carbon footprint. The safety and ongoing maintenance of the smart public transport system from cyberattacks are vitally important. To provide more comprehensive protection against potential cyberattacks, we propose a novel approach that combines blockchain technology and a deep learning method that can better protect the smart public transport system. By the creation of signed and verified blockchain blocks and chaining of hashed blocks, the blockchain in our proposal can withstand unauthorized integrity attack that tries to forge sensitive transport maintenance data and transactions associated with it. A hybrid deep learning-based method, which combines autoencoder (AE) and multi-layer perceptron (MLP), in our proposal can effectively detect distributed denial of service (DDoS) attempts that can halt or block the urgent and critical exchange of transport maintenance data across the stakeholders. The experimental results of the hybrid deep learning evaluated on three different datasets (i.e., CICDDoS2019, CIC-IDS2017, and BoT-IoT) show that our deep learning model is effective to detect a wide range of DDoS attacks achieving more than 95% F1-score across all three datasets in average. The comparison of our approach with other similar methods confirms that our approach covers a more comprehensive range of security properties for the smart public transport system.
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    Potential of Beetroot and Blackcurrant Compounds to Improve Metabolic Syndrome Risk Factors
    (MDPI (Basel, Switzerland), 25/05/2021) Haswell C; Ali A; Page R; Hurst R; Rutherfurd-Markwick K
    Metabolic syndrome (MetS) is a group of metabolic abnormalities, which together lead to increased risk of coronary heart disease (CHD) and type 2 diabetes mellitus (T2DM), as well as reduced quality of life. Dietary nitrate, betalains and anthocyanins may improve risk factors for MetS and reduce the risk of development of CHD and T2DM. Beetroot is a rich source of dietary nitrate, and anthocyanins are present in high concentrations in blackcurrants. This narrative review considers the efficacy of beetroot and blackcurrant compounds as potential agents to improve MetS risk factors, which could lead to decreased risk of CHD and T2DM. Further research is needed to establish the mechanisms through which these outcomes may occur, and chronic supplementation studies in humans may corroborate promising findings from animal models and acute human trials.
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    Sensors and Instruments for Brix Measurement: A Review
    (MDPI AG, 16/03/2022) Jaywant SA; Singh H; Arif KM
    Quality assessment of fruits, vegetables, or beverages involves classifying the products according to the quality traits such as, appearance, texture, flavor, sugar content. The measurement of sugar content, or Brix, as it is commonly known, is an essential part of the quality analysis of the agricultural products and alcoholic beverages. The Brix monitoring of fruit and vegetables by destructive methods includes sensory assessment involving sensory panels, instruments such as refractometer, hydrometer, and liquid chromatography. However, these techniques are manual, time-consuming, and most importantly, the fruits or vegetables are damaged during testing. On the other hand, the traditional sample-based methods involve manual sample collection of the liquid from the tank in fruit/vegetable juice making and in wineries or breweries. Labour ineffectiveness can be a significant drawback of such methods. This review presents recent developments in different destructive and nondestructive Brix measurement techniques focused on fruits, vegetables, and beverages. It is concluded that while there exist a variety of methods and instruments for Brix measurement, traits such as promptness and low cost of analysis, minimal sample preparation, and environmental friendliness are still among the prime requirements of the industry.
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    Methamphetamine detection using nanoparticle-based biosensors: A comprehensive review
    (Elsevier BV, 2022-12) Lal K; Noble F; Arif K
    Drug abuse is a global issue, requiring diverse techniques for recognition of drug of interest. One such illicit drug that is abused worldwide is Methamphetamine (METH). It is an addictive and illicit substance that severely affects the central nervous system. Similar to many other illicit substances, recognition of METH in biological fluids and in more diverse matrices such as wastewater, is a topic of great interest to the government and law enforcement agencies. With the rise of nanotechnology that relies on exploiting the properties of certain materials at a scale down to their nanometer range in conjunction with aptamers, molecularly imprinted polymers as well as antibodies have gained much attention over the last decade. The scope and appositeness of nanomaterials have significant characteristics that are highly suitable for recognition of illicit chemical compounds such as METH. This comprehensive review focuses on the detection of METH using nanoparticles in real world samples such as biological fluids and wastewater, while discussing varieties of materials used as nanoparticles and that aid in its recognition. It also offers insights into future opportunities and challenges that come with the use of nanotechnology in sensing applications.
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    Proteins isolated with TRIzol are compatible with two-dimensional electrophoresis and mass spectrometry analyses
    (Elsevier Masson, 2012) Young C; Truman P
    TRIzol is used for RNA isolation but also permits protein recovery. We investigated whether proteins prepared with TRIzol were suitable for two-dimensional gel electrophoresis (2-DE) and matrix-assisted laser desorption/ionization mass spectrometry. Proteins from TRIzol-treated SH-SY5Y cells produced 2-DE spot patterns similar to those from an equivalent untreated sample. Subsequent identification of TRIzol-treated proteins using peptide mass fingerprinting was successful. TRIzol exposure altered neither the mass of myoglobin extracted from sodium dodecyl sulfate (SDS) gels nor the masses of myoglobin peptides produced by in-gel trypsin digestion. These findings suggest that proteins isolated with TRIzol remain amenable to proteomic analyses.
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    Low-Cost Sensor for Continuous Measurement of Brix in Liquids
    (MDPI AG, 25/11/2022) Jaywant SA; Singh H; Arif K
    This paper presents a Brix sensor based on the differential pressure measurement principle. Two piezoresistive silicon pressure sensors were applied to measure the specific gravity of the liquid, which was used to calculate the Brix level. The pressure sensors were mounted inside custom-built water-tight housings connected together by fixed length metallic tubes containing the power and signal cables. Two designs of the sensor were prepared; one for the basic laboratory testing and validation of the proposed system and the other for a fermentation experiment. For lab tests, a sugar solution with different Brix levels was used and readings from the proposed sensor were compared with a commercially available hydrometer called Tilt. During the fermentation experiments, fermentation was carried out in a 1000 L tank over 7 days and data was recorded and analysed. In the lab experiments, a good linear relationship between the sugar content and the corresponding Brix levels was observed. In the fermentation experiment, the sensor performed as expected but some problems such as residue build up were encountered. Overall, the proposed sensing solution carries a great potential for continuous monitoring of the Brix level in liquids. Due to the usage of low-cost pressure sensors and the interface electronics, the cost of the system is considered suitable for large scale deployment at wineries or juice processing industries.
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    Robust SERS Platforms Based on Annealed Gold Nanostructures Formed on Ultrafine Glass Substrates for Various (Bio)Applications
    (MDPI (Basel, Switzerland), 2019-06) Zhou L; Poggesi S; Casari Bariani G; Mittapalli R; Adam P-M; Manzano M; Ionescu RE
    In this study, stable gold nanoparticles (AuNPs) are fabricated for the first time on commercial ultrafine glass coverslips coated with gold thin layers (2 nm, 4 nm, 6 nm, and 8 nm) at 25 °C and annealed at high temperatures (350 °C, 450 °C, and 550 °C) on a hot plate for different periods of time. Such gold nanostructured coverslips were systematically tested via surface enhanced Raman spectroscopy (SERS) to identify their spectral performances in the presence of different concentrations of a model molecule, namely 1,2-bis-(4-pyridyl)-ethene (BPE). By using these SERS platforms, it is possible to detect BPE traces (10-12 M) in aqueous solutions in 120 s. The stability of SERS spectra over five weeks of thiol-DNA probe (2 µL) deposited on gold nano-structured coverslip is also reported.
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    Tissue-Specific Sample Dilution: An Important Parameter to Optimise Prior to Untargeted LC-MS Metabolomics.
    (MDPI (Basel, Switzerland), 27/06/2019) Wu ZE; Kruger MC; Cooper GJS; Poppitt SD; Fraser K
    When developing a sample preparation protocol for LC-MS untargeted metabolomics of a new sample matrix unfamiliar to the laboratory, selection of a suitable injection concentration is rarely described. Here we developed a simple workflow to address this issue prior to untargeted LC-MS metabolomics using pig adipose tissue and liver tissue. Bi-phasic extraction was performed to enable simultaneous optimisation of parameters for analysis of both lipids and polar extracts. A series of diluted pooled samples were analysed by LC-MS and used to evaluate signal linearity. Suitable injected concentrations were determined based on both the number of reproducible features and linear features. With our laboratory settings, the optimum concentrations of tissue mass to reconstitution solvent of liver and adipose tissue lipid fractions were found to be 125 mg/mL and 7.81 mg/mL respectively, producing 2811 (ESI+) and 4326 (ESI-) linear features from liver, 698 (ESI+) and 498 (ESI-) linear features from adipose tissue. For analysis of the polar fraction of both tissues, 250 mg/mL was suitable, producing 403 (ESI+) and 235 (ESI-) linear features from liver, 114 (ESI+) and 108 (ESI-) linear features from adipose tissue. Incorrect reconstitution volumes resulted in either severe overloading or poor linearity in our lipid data, while too dilute polar fractions resulted in a low number of reproducible features (<50) compared to hundreds of reproducible features from the optimum concentration used. Our study highlights on multiple matrices and multiple extract and chromatography types, the critical importance of determining a suitable injected concentration prior to untargeted LC-MS metabolomics, with the described workflow applicable to any matrix and LC-MS system.