Journal Articles
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Item Comparative genome identification of accessory genes associated with strong biofilm formation in Vibrio parahaemolyticus.(Elsevier B.V., 2023-04-01) Wang D; Fletcher GC; Gagic D; On SLW; Palmer JS; Flint SHVibrio parahaemolyticus biofilms on the seafood processing plant surfaces are a potential source of seafood contamination and subsequent food poisoning. Strains differ in their ability to form biofilm, but little is known about the genetic characteristics responsible for biofilm development. In this study, pangenome and comparative genome analysis of V. parahaemolyticus strains reveals genetic attributes and gene repertoire that contribute to robust biofilm formation. The study identified 136 accessory genes that were exclusively present in strong biofilm forming strains and these were functionally assigned to the Gene Ontology (GO) pathways of cellulose biosynthesis, rhamnose metabolic and catabolic processes, UDP-glucose processes and O antigen biosynthesis (p < 0.05). Strategies of CRISPR-Cas defence and MSHA pilus-led attachment were implicated via Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation. Higher levels of horizontal gene transfer (HGT) were inferred to confer more putatively novel properties on biofilm-forming V. parahaemolyticus. Furthermore, cellulose biosynthesis, a neglected potential virulence factor, was identified as being acquired from within the order Vibrionales. The cellulose synthase operons in V. parahaemolyticus were examined for their prevalence (22/138, 15.94 %) and were found to consist of the genes bcsG, bcsE, bcsQ, bcsA, bcsB, bcsZ, bcsC. This study provides insights into robust biofilm formation of V. parahaemolyticus at the genomic level and facilitates: identification of key attributes for robust biofilm formation, elucidation of biofilm formation mechanisms and development of potential targets for novel control strategies of persistent V. parahaemolyticus.Item Influence of age and dietary cellulose levels on ileal endogenous energy losses in broiler chickens(Elsevier Inc. on behalf of Poultry Science Association Inc., 2022-07) Khalil MM; Abdollahi MR; Zaefarian F; Chrystal PV; Ravindran VTwo experiments were conducted to investigate the influence of age and dietary cellulose levels on the ileal endogenous energy losses (IEEL) in broiler chickens. In experiment 1, a glucose-based purified diet was used to determine the IEEL. Titanium dioxide (5.0 g/kg) was added to the diet as an indigestible marker. Six groups of broiler chickens aged 1 to 7, 8 to 14, 15 to 21, 22 to 28, 29 to 35 or 36 to 42 d posthatch, were utilized. With the exception of 1-7 d, the birds were fed a starter (d 1–21) and/or a finisher (d 22–35) diet before the experimental diet was introduced. The diet was randomly allocated to 6 replicate cages, and the number of birds per cage was 12 (d 1–7), 10 (d 8–14), and 8 (d 15–42). The ileal digesta were collected at the last day of each week (d 7, 14, 21, 28, 35, and 42). Bird age had no effect (P > 0.05) on the IEEL estimates. The IEEL estimates ranged from 263 to 316 kcal/kg dry matter intake (DMI) during weeks 1 to 6. In Experiment 2, 4 glucose-based purified diets were developed using 0, 25, 50 and 75 g/kg cellulose. Titanium dioxide (5.0 g/kg) was added to the diets as an indigestible marker. The diets were randomly allocated to 6 replicate cages (8 birds per cage) and fed from 18 to 21 d posthatch and, ileal digesta were collected on d 21. The IEEL estimates of broiler chickens at 21 d of age showed a quadratic response (P < 0.05) to increasing cellulose contents. The lowest IEEL (88 kcal/kg DMI) was recorded for the diet without cellulose and the highest IEEL (430 kcal/kg DMI) was observed for the diet with 75 g/kg cellulose. Overall, the present findings confirmed that the IEEL in broiler chickens can be quantified by feeding a glucose-based purified diet. Broiler age had no influence on the IEEL estimates. The IEEL increased with increasing dietary cellulose contents and the IEEL determined using a purified diet without cellulose represents a better estimate of IEEL.Item Comparison of Cd(II) adsorption properties onto cellulose, hemicellulose and lignin extracted from rice bran(Elsevier Ltd, 2021-06) Wu C; Ren M; Zhang X; Li C; Li T; Yang Z; Chen Z; Wang LRice bran, an underutilized by-product obtained from outer rice layers, has received wide interest due to its abundance, eco-friendliness, and low cost. In this research, cellulose, hemicellulose and lignin as the main components of rice bran were fractionated, and their Cd(II) adsorption capacity, behavior and mechanism were further studied. The adsorption capacity of cellulose for Cd(II) was 5.79 mg/g within the equilibrium time of 10 min, which was 1.8 and 3.6 times those of hemicellulose and lignin, respectively. The Cd(II) adsorption onto cellulose exhibited monolayer surface behavior, whilst the heterogeneous adsorption behavior was observed for hemicellulose and lignin. These differences were related to the discrepancy of morphology and chemical composition in three polymers. The multi-hole sticks morphology of cellulose and porous blocky structure of hemicellulose were observed, while lignin showed compact and agglomerated blocky structure. Cellulose had numerous available adsorption sites including the oxygen-containing functional groups, which bonded with Cd(II) driven by chemical interaction. In conclusion, it highlights that cellulose from rice bran has the great potential of being applied as adsorbent for the Cd(II) removal.