Journal Articles
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Item Investigating the effect of prophylactic claw trimming on the interval between calving and first observed elevated locomotion score in pasture-based dairy cows.(Taylor and Francis Group, 2023-11-01) Werema CW; Hoekstra F; Laven LJ; Müller KR; Gifford D; Laven RAAIMS: To evaluate, in a pasture-based dairy herd, the response to a three-time point hoof trimming regime on lameness incidence and time from calving to observation of an elevated locomotion score (LS). METHODS: This study was conducted on a 940-cow spring-calving herd in New Zealand's North Island between May 2018 and May 2019. Cows (n = 250) were randomly allocated to the hoof trimming group, with the remainder assigned to the non-trim cohort. One trained professional hoof trimmer used the five-step Dutch method to trim the hind feet of the trimming group. Throughout the subsequent production season, the whole herd was locomotion-scored fortnightly using the 4-point (0-3) Dairy NZ lameness score. Kaplan-Meier survival curves were used to assess the univariable effect of trimming on the interval between calving and first LS of ≥ 2 and first LS ≥ 1. A multivariable Cox proportional hazards regression was used to further evaluate the effect of trimming on time to elevated LS. RESULTS: Mean lameness (LS ≥ 2) prevalence was 2.6%, with 30% of cows having ≥ 4 observations during the study period when at least one LS was ≥ 2. For LS ≥ 1, mean prevalence was 40%, with 98.6% of cows having ≥ 4 observations during the study period when at least one LS was ≥ 1 during lactation. Hoof trimming had no apparent effect on the incidence of clinical lameness (LS ≥ 2) (trimmed vs. non-trimmed: 33.2% vs. 28.8%, respectively), but for LS ≥ 1, there was a small decrease in the incidence of LS ≥ 1 (trimmed vs. non-trimmed: 96.9% vs. 99.3%, respectively). The hazard of a cow having a first observed LS ≥ 2 in the control group was 0.87 (95% CI = 0.66-1.14) times that of the trimmed group; however, the hazard of a cow having a first LS ≥ 1 was 1.60 (95% CI = 1.37-1.88) times higher in the control than in the trimmed group. CONCLUSION AND CLINICAL RELEVANCE: On this farm, prophylactic hoof trimming had no clinically relevant impact on the incidence of clinical lameness and was not associated with clinically beneficial reductions in time to first observed LS ≥ 2. This may be because claw horn imbalance was not pronounced on this farm, with 53% of cows needing no trim on either hind limb on the first trimming occasion. Further research on the response to prophylactic trimming in pasture-based dairy cattle is required.Item Evaluating the Effect of Preventative Trimming on Distance from the Sole Surface to the Distal Phalanx Using Ultrasonography for Lameness Prevention in Pasture-Based Dairy Cows.(MDPI (Basel, Switzerland), 2023-02-01) Werema CW; Laven LJ; Mueller KR; Laven RA; Bø-Granquist EGOne common management strategy used to reduce the risk of lameness is prophylactic claw trimming. However, in pasture-based cattle, there is a concern that the immediate reduction in sole thickness resulting from sole trimming will lead to medium-to-long-term reductions in sole thickness, which may increase the risk of lameness. Nevertheless, there is a lack of data on sole thickness and trimming in pasture-based cows. Therefore, the aim of this study was to evaluate the effect of trimming on sole thickness over the medium-to-long term, as estimated using the ultrasound-measured distance from the external claw sole surface to the distal phalanx (DDP) and of DDP on the interval between calving and increased locomotion scores. A total of 38 cows were randomly selected from a 940-cow spring calving dairy farm in the North Island of New Zealand; 18 were allocated to the ultrasound hoof-trimming group and 20 were allocated to the ultrasound non-trimming group. Starting in May 2018, at the end of the 2017/18 lactation, ultrasound measurements of DDP of the right hind hoof were made on all 38 cows, and the hindlimbs of the trimming group cows were trimmed by an experienced professional hoof trimmer using the five-step Dutch method. This was repeated in October 2018 (early lactation) and May 2019 (late lactation). After calving, the cows were locomotion scored fortnightly until the end of lactation using the 4-point (0-3) scale DairyNZ system. The effect of DDP on the interval between calving and the first locomotion scores ≥1 and ≥2 was assessed using Cox proportional hazards models, and the association between trimming and DDP was explored using linear mixed models. The results suggest that DDP has no effect on the time to locomotion scores ≥1 or ≥2, although the wide confidence intervals of the latter suggest that more data are needed before any definitive conclusions can be drawn. The study failed to find any clinically important impact of prophylactic trimming on DDP. This is likely related to the finding that cows with the highest DDP at the first trimming were identified by the hoof trimmer as those needing the most trimming. The results of this study thus suggest that if the Dutch five-step method is properly applied, it is unlikely to affect sole thickness over the short-to-medium term in pasture-based cattle.Item Heart Rate and Heart Rate Variability Change with Sleep Stage in Dairy Cows(MDPI (Basel, Switzerland), 2021-07-14) Hunter LB; Haskell MJ; Langford FM; O'Connor C; Webster JR; Stafford KJ; Van Eerdenburg FJCMChanges to the amount and patterns of sleep stages could be a useful tool to assess the effects of stress or changes to the environment in animal welfare research. However, the gold standard method, polysomnography PSG, is difficult to use with large animals such as dairy cows. Heart rate (HR) and heart rate variability (HRV) can be used to predict sleep stages in humans and could be useful as an easier method to identify sleep stages in cows. We compared the mean HR and HRV and lying posture of dairy cows at pasture and when housed, with sleep stages identified through PSG. HR and HRV were higher when cows were moving their heads or when lying flat on their side. Overall, mean HR decreased with depth of sleep. There was more variability in time between successive heart beats during REM sleep, and more variability in time between heart beats when cows were awake and in REM sleep. These shifts in HR measures between sleep stages followed similar patterns despite differences in mean HR between the groups. Our results show that HR and HRV measures could be a promising alternative method to PSG for assessing sleep in dairy cows.Item Evaluating Alternatives to Locomotion Scoring for Lameness Detection in Pasture-Based Dairy Cows in New Zealand: Infra-Red Thermography(MDPI (Basel, Switzerland), 2021-12-06) Werema CW; Laven L; Mueller K; Laven R; Kofler JLameness in cattle is a complex condition with huge impacts on welfare, and its detection is challenging for the dairy industry. The present study aimed to evaluate the association between foot skin temperature (FST) measured using infrared thermography (IRT) and locomotion scoring (LS) in dairy cattle kept at pasture. Data were collected from a 940-cow dairy farm in New Zealand. Cows were observed at two consecutive afternoon milkings where LS was undertaken at the first milking (4-point scale (0-3), DairyNZ). The next day, cows were thermally imaged from the plantar aspect of the hind feet using a handheld T650sc forward-looking infrared camera (IRT). The association between FST and locomotion score was analysed using a generalised linear model with an identity link function and robust estimators. ROC curves were performed to determine optimal threshold temperature cut-off values by maximising sensitivity and specificity for detecting locomotion score ≥ 2. There was a linear association between individual locomotion scores and FST. For mean temperature (MT), each one-unit locomotion score increase was associated with a 0.944 °C rise in MT. Using MT at a cut-off point of 34.5 °C produced a sensitivity of 80.0% and a specificity of 92.4% for identifying cows with a locomotion score ≥ 2 (lame). Thus, IRT has a substantial potential to be used on-farm for lameness detection. However, automation of the process will likely be necessary for IRT to be used without interfering with farm operations.Item Evaluating Alternatives to Locomotion Scoring for Detecting Lameness in Pasture-Based Dairy Cattle in New Zealand: In-Parlour Scoring(MDPI (Basel, Switzerland), 2022-03-11) Werema CW; Yang DA; Laven LJ; Mueller KR; Laven RA; Kofler JEarlier detection followed by efficient treatment can reduce the impact of lameness. Currently, locomotion scoring (LS) is the most widely used method of early detection but has significant limitations in pasture-based cattle and is not commonly used routinely in New Zealand. Scoring in the milking parlour may be more achievable, so this study compared an in-parlour scoring (IPS) technique with LS in pasture-based dairy cows. For nine months on two dairy farms, whole herd LS (4-point 0−3 scale) was followed 24 h later by IPS, with cows being milked. Observed for shifting weight, abnormal weight distribution, swollen heel or hock joint, and overgrown hoof. Every third cow was scored. Sensitivity and specificity of individual IPS indicators and one or more, two or more or three positive indicators for detecting cows with locomotion scores ≥ 2 were calculated. Using a threshold of two or more positive indicators were optimal (sensitivity > 92% and specificity > 98%). Utilising the IPS indicators, a decision tree machine learning procedure classified cows with locomotion score class ≥2 with a true positive rate of 75% and a false positive rate of 0.2%. IPS has the potential to be an alternative to LS on pasture-based dairy farms.Item Nitrogen Use Efficiency and Excretion in Grazing Cows with High and Low Milk Urea Nitrogen Breeding Values(MDPI (Basel, Switzerland), 2021-09-01) Correa-Luna M; Donaghy D; Kemp P; Schutz M; Lopez-Villalobos NMilk urea nitrogen content is moderately heritable and is phenotypically related to urine nitrogen (UN). Based on this relationship, it has been suggested that genetic selection for lower milk urea nitrogen in grazing dairy cows could decrease UN concentration thereby reducing nitrogen excretions into the ground. The objective of this study was to compare the nitrogen use efficiency (NUE) and excretion in grazing cows with high and low milk urea nitrogen breeding values (MUNBV) in two farms of contrasting farming intensity. On the high-intensity farm (HIF) 68 and 70 cows with low and high MUNBV, respectively, were fed higher levels of supplementation and milked twice-daily, while on the low-intensity farm (LIF) 82 and 86 cows with low and high MUNBV, respectively, were fed lower levels of supplementation milked once-daily. Nitrogen use efficiency (g/g) was calculated as the ratio of daily milk N to daily N intake. Daily N intake (g/day) was derived from feed intake estimates based on energy requirements. The UN (g/day) was estimated by back-calculation from dietary N and subtracting milk N, faecal N, and N retained in body tissues. Irrespective of farm, cows with low MUNBV had significantly lower MY and milk urea nitrogen (p < 0.001) but this was not linked to significantly less UN. In the LIF, cows with low MUNBV had lower NUE (p < 0.001) than cows with high MUNBV, and this was explained by the reduced protein yield (p < 0.001). Selecting cows for low MUNBV was not an effective tool to reduce N losses and to increase the NUE in two dairy farms of contrasting farming intensity.Item Nitrogen Excretion by Dairy Cows Grazing Plantain (Plantago lanceolata) Based Pastures during the Lactating Season(MDPI (Basel, Switzerland), 2022-02-14) Navarrete S; Rodriguez M; Horne D; Hanly J; Hedley M; Kemp PThe use of plantain pasture in dairy systems can potentially reduce nitrogen (N) leaching losses via the lower N concentration in the urine (UNc) of cows. Reducing the urinary N load while cows graze pastures can reduce the risk of N leaching losses from urine patches. Research needs to demonstrate that these environmental benefits are not at the expense of milk production and farm profit. Three groups of 20 cows grazed in the following three pasture treatments: (i) plantain, (ii) plantain-clover mix (plantain, red [Trifolium pratense] and white clover), or (iii) ryegrass-white clover (wc) pastures, from spring to autumn for two years. Each year, pasture intake, diet quality, milk production and animal N (milk and urine) excretion were evaluated in spring, summer, and autumn. The cows grazing the plantain and plantain-clover mix pastures produced similar milk solids as cows grazing ryegrass-wc pasture but reduced their UNc during summer and autumn, when compared to those grazing the plantain-clover mix and ryegrass-wc pastures. Plantain reduced urinary N loads onto pastures by a greater number of urine patches with lower urinary N loading rates. The results demonstrate that plantain pastures do not diminish milk solids production from cows, and the lower UNc from summer to autumn could reduce N being lost to the environment.Item Identification of Genomic Regions Associated with Concentrations of Milk Fat, Protein, Urea and Efficiency of Crude Protein Utilization in Grazing Dairy Cows(MDPI (Basel, Switzerland), 2021-03-23) Ariyarathne HBPC; Correa-Luna M; Blair HT; Garrick DJ; Lopez-Villalobos NAbstract The objective of this study was to identify genomic regions associated with milk fat percentage (FP), crude protein percentage (CPP), urea concentration (MU) and efficiency of crude protein utilization (ECPU: ratio between crude protein yield in milk and dietary crude protein intake) using grazing, mixed-breed, dairy cows in New Zealand. Phenotypes from 634 Holstein Friesian, Jersey or crossbred cows were obtained from two herds at Massey University. A subset of 490 of these cows was genotyped using Bovine Illumina 50K SNP-chips. Two genome-wise association approaches were used, a single-locus model fitted to data from 490 cows and a single-step Bayes C model fitted to data from all 634 cows. The single-locus analysis was performed with the Efficient Mixed-Model Association eXpedited model as implemented in the SVS package. Single nucleotide polymorphisms (SNPs) with genome-wide association p-values ≤ 1.11 × 10−6 were considered as putative quantitative trait loci (QTL). The Bayes C analysis was performed with the JWAS package and 1-Mb genomic windows containing SNPs that explained > 0.37% of the genetic variance were considered as putative QTL. Candidate genes within 100 kb from the identified SNPs in single-locus GWAS or the 1-Mb windows were identified using gene ontology, as implemented in the Ensembl Genome Browser. The genes detected in association with FP (MGST1, DGAT1, CEBPD, SLC52A2, GPAT4, and ACOX3) and CPP (DGAT1, CSN1S1, GOSR2, HERC6, and IGF1R) were identified as candidates. Gene ontology revealed six novel candidate genes (GMDS, E2F7, SIAH1, SLC24A4, LGMN, and ASS1) significantly associated with MU whose functions were in protein catabolism, urea cycle, ion transportation and N excretion. One novel candidate gene was identified in association with ECPU (MAP3K1) that is involved in post-transcriptional modification of proteins. The findings should be validated using a larger population of New Zealand grazing dairy cows.Item Can Nitrogen Excretion of Dairy Cows Be Reduced by Genetic Selection for Low Milk Urea Nitrogen Concentration?(MDPI (Basel, Switzerland), 2021-03-08) Ariyarathne HBPC; Correa-Luna M; Blair H; Garrick D; Lopez-Villalobos NThe objectives of this study were two-fold. Firstly, to estimate the likely correlated responses in milk urea nitrogen (MUN) concentration, lactation yields of milk (MY), fat (FY) and crude protein (CPY) and mature cow liveweight (LWT) under three selection scenarios which varied in relative emphasis for MUN; 0% relative emphasis (MUN0%: equivalent to current New Zealand breeding worth index), and sign of the economic value; 20% relative emphasis positive selection (MUN+20%), and 20% relative emphasis negative selection (MUN−20%). Secondly, to estimate for these three scenarios the likely change in urinary nitrogen (UN) excretion under pasture based grazing conditions. The predicted genetic responses per cow per year for the current index were 16.4 kg MY, 2.0 kg FY, 1.4 kg CPY, −0.4 kg LWT and −0.05 mg/dL MUN. Positive selection on MUN in the index resulted in annual responses of 23.7 kg MY, 2.0 kg FY, 1.4 kg CPY, 0.6 kg LWT and 0.10 mg/dL MUN, while negative selection on MUN in the index resulted in annual responses of 5.4 kg MY, 1.6 kg FY, 1.0 kg CPY, −1.1 kg LWT and −0.17 mg/dL MUN. The MUN−20% reduced both MUN and cow productivity, whereas the MUN+20% increased MUN, milk production and LWT per cow. Per cow dry matter intake (DMI) was increased in all three scenarios as milk production increased compared to base year, therefore stocking rate (SR) was adjusted to control pasture cover. Paradoxically, ten years of selection with SR adjusted to maintain annual feed demand under the MUN+20% actually reduced per ha UN excretion by 3.54 kg, along with increases of 63 kg MY, 26 kg FY and 16 kg CPY compared to the base year. Ten years of selection on the MUN0% index generated a greater reductions of 10.45 kg UN and 30 kg MY, and increases of 32 kg FY and 21 kg CPY per ha, whereas the MUN−20% index reduced 14.06 kg UN and 136 kg MY with increases of 32 kg FY and 18 kg CPY compared to base year. All three scenarios increased partitioning of nitrogen excreted as feces. The selection index that excluded MUN was economically beneficial in the current economic circumstances over selection indices including MUN regardless of whether selection was either for or against MUN. There was no substantial benefit from an environmental point of view from including MUN in the Breeding Worth index, because N leaching is more a function of SR rather than of individual cow UN excretion. This study demonstrates that attention needs to be paid to the whole system consequences of selection for environmental outcomes in pastoral grazing circumstances.Item Mathematical modelling of anoestrus in dairy cows and the linkage to nutrition(1/01/2005) Smith, JF; Soboleva, TK; Peterson, AJ; Pleasants, T; Chagas, LM; Burke, CRPostpartum anoestrus is a major reproductive problem in New Zealand dairy cows and its duration is related to the nutrition levels both pre and post calving. However, the mechanistic details of this relationship are largely unknown. A better understanding of the interactions between nutritional status, and the levels of the reproductive hormones controlling follicle development and ovulation is needed. A mathematical model consisting of a set of interactive nonlinear differential equations and describing the dynamics of the interactions among luteinising hormone (LH), follicle stimulating hormone (FSH) and oestradiol was developed. The model depicts oestradiol profiles generated by individual follicles from the first follicular wave after calving until ovulation, and changes in LH pulsatility leading to the first pre-ovulatory surge are also produced. The robustness of the model was ascertained from iterative processes, and it was also checked against existing experimental data so as to mimic observed changes in hormone levels. It was shown that two mathematical parameters which control: i) the speed of changes in the feedback of LH activity to oestradiol; and, ii) the sensitivity of the ovarian response to LH, have the greatest effect on duration of anoestrus.