Journal Articles
Permanent URI for this collectionhttps://mro.massey.ac.nz/handle/10179/7915
Browse
371 results
Search Results
Item Temporal reconstruction of a Salmonella Enteritidis ST11 outbreak in New Zealand(Microbiology Society, 2025-10-30) Strydom H; Wright J; Bromhead C; Welch D; Williams E; Mulqueen K; de Ligt J; Biggs PJ; Paine S; Jefferies S; French NOutbreaks caused by Salmonella Enteritidis are commonly linked to eggs and poultry meat internationally, but this serovar had never been detected in Aotearoa New Zealand (NZ) poultry prior to 2021. Locally designated genomic cluster Salmonella Enteritidis_2019_C_01, was implicated in a 2019 outbreak associated with a restaurant in Auckland. Four Enteritidis_2019_C_01 sub-clusters have since been identified, two retrospectively, in the Auckland region. Authorities initiated a formal outbreak investigation after genomically indistinguishable S. Enteritidis was isolated from the NZ poultry production environment. This study analysed 231 S. Enteritidis genomes obtained from the outbreak using Bayesian phylodynamic tools to gain insight into the outbreak's dynamics and origin. We used Bayesian integrated coalescent epoch plots to estimate the change of the Enteritidis ST11 population size over time and marginal structured coalescent approximation to estimate transmission between poultry producers. We investigated human and poultry isolates to elucidate the time and location of the most recent common ancestor of the outbreak and transmission pathways. The median most recent common ancestor was estimated to be February 2019. We found evidence of amplification and spread of strain Enteritidis_2019_C_01 within the poultry industry, as well as transmission events throughout the production chain. The intervention by the public health and food safety authorities coincided with a drop in the effective population size of the S. Enteritidis ST11 as well as notified human cases. This information is crucial for understanding and preventing the transmission of S. Enteritidis in NZ poultry to ensure poultry meat and eggs are safe for consumption.Item Phlorotannins from New Zealand brown seaweeds: Extraction, antioxidant activity, and food applications(Elsevier Ltd, 2025-12-01) Zhang R; Khan A; Singh J; Kaur LBrown seaweed, a type of marine macroalgae, is a sustainable resource for human consumption that plays an important role in several cultures, including Aotearoa New Zealand. Brown seaweeds have a relatively high content of phenolic compounds and, exclusively, phlorotannins, which have garnered increasing attention due to their bioactive properties. Applications of these phenolic compounds have been developed for therapy, food additives, material manufacturing, and fertilisers. Among these, their antioxidant property is especially important for the food industry, but limited research has been conducted. This review investigated the nutrition profile of New Zealand brown seaweed species, which are rich in macronutrients, and addressed safety concerns regarding heavy metals and iodine. Phlorotannin content, extraction methods, and their promising antioxidant activities were then compared between New Zealand and global brown seaweeds. According to the current research, they have comparable phlorotannin content and antioxidant activities. More importantly, the potential of applying brown seaweed species as an antioxidant in food matrices was explored. Although successful trials have utilised (New Zealand) brown seaweed extracts as antioxidants for various foods, their widespread commercial use remains rare. The seaweed industry in New Zealand has not been established, and the seaweed is heavily reliant on wild harvest and imports. In conclusion, more effort is needed to develop a comprehensive, evidence-based understanding of New Zealand's brown seaweeds, ultimately enabling the commercialization of this promising resource as antioxidants in food products.Item General practitioner and nurse experiences of type 2 diabetes management and prescribing in primary care: a qualitative review following the introduction of funded SGLT2i/GLP1RA medications in Aotearoa New Zealand.(Cambridge University Press, 2024-09-16) Norman K; Mustafa ST; Cassim S; Mullins H; Clark P; Keenan R; Te Karu L; Murphy R; Paul R; Kenealy T; Chepulis LAIM: To explore the views of general practitioners (GPs) and nurses on type 2 diabetes (T2D) management, including the use of recently funded T2D medications in New Zealand (NZ) and their perceived barriers to providing optimal care. BACKGROUND: T2D is a significant health concern in NZ, particularly among Māori and Pacific adults. Characterised by prolonged hyperglycaemia, T2D is generally a progressive condition requiring long-term care. METHODS: Semi-structured interviews were conducted between July and December 2022 with 21 primary care clinicians (10 GPs and 11 nurses/nurse prescribers) from nine different general practice clinics across the Auckland and Waikato regions of NZ. Framework analysis was conducted to identify common themes in clinicians' perceptions and experiences with T2D management. FINDINGS: Three themes were identified: health-system factors, new medications, and solution-based approaches. Lack of clinician time, healthcare funding, staff shortages, and burn-out were identified as barriers to T2D management under health-system factors. The two newly funded medications, empagliflozin and dulaglutide, were deemed to be a positive change for T2D care in that they improved patient satisfaction and clinical outcomes, but several clinicians were hesitant to prescribe these medications. Participants suggested that additional education and specialist diabetes support would be helpful to inform optimal medication prescribing and that better use of a multi-disciplinary team (clinical and support staff) could support T2D care by reducing workload, addressing cultural gaps in healthcare delivery, and reducing burnout. An improved primary care work environment, including appropriate professional development to support prescribing of new medications and the value of collaboration with a non-regulated workforce, may be required to facilitate optimal T2D management in primary care. Future research should focus on interventions to increase support for both clinical teams and patients while adopting a culturally appropriate approach to increase patient satisfaction and improve health outcomes.Item An assessment of the accuracy of morphological techniques for identifying Lucilia cuprina and Lucilia sericata (Diptera: Calliphoridae)(Taylor and Francis Group on behalf of the New Zealand Veterinary Association, 2025-10-13) Brett PTJ; Lawrence KE; Kenyon PR; Gedye K; Fermin LM; Pomroy WAims: To assess the accuracy of the morphological identification of Lucilia cuprina and Lucilia sericata by using molecular analysis as a reference standard test, and to describe the seasonality of these species. Methods: A convenience sample of L. cuprina and L. sericata flies was caught on eight farms from across New Zealand and stored at room temperature in 70% alcohol. They were first morphologically identified using published keys and then molecularly identified using primers to amplify the 28S rRNA region of the nuclear genome. The accuracy of the morphological identification was then estimated for each species using the molecular identification as a reference standard test. The correctness of the published keys was also tested by re-examining a sample of misidentified flies using enhanced magnification and photography. Results: The accuracy of the morphological identification for L. cuprina was 0.66 (95% CI = 0.58–0.73) and for L. sericata was 0.7 (95% CI = 0.62–0.77). There was no evidence for a difference in accuracy between species (p = 0.56), and re-examination of the misidentified flies found no faults in the published keys. The study confirmed that L. cuprina has a longer season of activity than L. sericata. Conclusions: These results emphasise the need to use molecular methods to confirm the identification of these species, especially when dealing with large, stored collections, rather than to rely on morphological identification alone. Clinical relevance: Without accurate fly identification and knowledge of insecticide resistance status, effective control and prevention of flystrike in New Zealand could be handicapped.Item Evolutionary relationships in Santalales inferred using target capture with Angiosperms353, focusing on Australasian Santalaceae sensu lato(CSIRO Publishing, Australia, 2025-08) Anderson BM; Edlund M; James SA; Lepschi BJ; Nickrent DL; Sultan A; Tate JA; Petersen G; Murphy DThe angiosperm order Santalales comprises more than 2500 species, most of which are hemi- or holoparasitic on other plants, and derive water and nutrients via specialised structures that attach to host roots or stems. The parasitic lifestyle has affected the morphology and genomes of these plants, and classification of the order has been difficult, with outstanding questions about membership of and relationships between families in the order. We chose to focus on improving phylogenetic sampling in the broadly circumscribed Santalaceae sens. lat., with emphasis on Australasian members of Amphorogynaceae and Viscaceae as part of the Genomics for Australian Plants Initiative. We used target capture with the Angiosperms353 bait set to generate a dataset of 318 nuclear loci × 195 samples, including publicly available data from other Santalales families. Phylogenetic inferences using maximum likelihood concatenation and a summary coalescent approach were largely congruent and resolved relationships between most families, agreeing with much of the previous work on the order. Some relationships that have been difficult to resolve remained so, such as branching order among some families in Olacaceae sens. lat. and Santalaceae sens. lat. Denser sampling in Amphorogynaceae and Viscaceae provided new insights into species-level relationships in genera such as Leptomeria and Choretrum, and allowed testing of recent phylogenetic work in Korthalsella. Our new phylogenetic hypothesis is consistent with one origin of root hemiparasitism, two origins of holoparasitism and five origins of aerial parasitism in the order. Although Angiosperms353 was successful, some phylogenetic bias in gene recovery suggests that future studies may benefit from more specific baits and deeper sequencing, especially for Viscaceae.Item Prevalence of human T-cell lymphotropic virus type 1 or 2 among blood donors screened at the New Zealand Blood Service: An observational study, 2001–2024(Elsevier B.V., 2025-10) Aye PS; Gray L; Charlewood R; Bennett W; Bromhead C; Balm M; Crengle S; Bartholomew KObjective To investigate prevalence of Human T-cell Lymphotropic Virus type 1 or 2 (HTLV-1/2) using the New Zealand Blood Service (NZBS) data, to inform whether further HTLV-1/2 prevalence study may be required, in the context of drivers of the inequities in lung cancer for Māori (the Indigenous population). Methods This observational cross-sectional study used the NZBS data of all blood donors nationwide (01/01/2001–30/06/2024). Prevalence overall and by ethnicity was calculated as the number of confirmed HTLV-1/2 positive cases per 10,000 donors. Results Of 679,946 new donors over the 23.5 years, 25 HTLV-1/2 positive cases were identified. The overall prevalence of HTLV-1/2 in New Zealand was 0.4 cases per 10,000 donors, highest among Middle Eastern, Latin American and African ethnicity (six cases per 10,000 donors), with no positive cases in Māori and Pacific donors. Among the positive cases, the highest proportions were seen separately for those aged 25–34, females, of New Zealand European ethnicity, resident in Auckland, and born in India, compared to their counterparts. Conclusions Prevalence of HTLV-1/2 infection among blood donors in New Zealand was very low, with no evidence of infection among Māori and Pacific donors, suggesting that a wider HTLV-1/2 seroprevalence study was unlikely to be necessary.Item Surveying pet owners’ attitudes towards roaming cats in Aotearoa New Zealand(Taylor and Francis Group on behalf of the New Zealand Veterinary Association, 2025-08-24) Awawdeh L; Waran N; Pearson M; Forrest RHAim: To examine the attitudes of pet owners towards roaming cats in New Zealand. Materials and methods: Data was used from a survey of New Zealand residents aged over 18 conducted online between January and March 2019. Along with demographic questions, the respondents were asked, “Do you think that roaming pet dogs and cats are a problem?” (yes, no, never thought about it) and if they answered “yes”, were invited to explain their answers. Thematic analysis was applied to open-text responses focused on cats, while quantitative data were analysed using descriptive statistics. Results: Of a total of 2,744 participants, 2,292 answered the question regarding roaming pets, with 72% (n = 1,654) viewing roaming pets as problematic. While gender, ethnicity, and rural upbringing showed no significant association with this view, age, education level, place of residence, and pet ownership did. Explanations for their choice of answer were given by 1,479 respondents and highlighted key concerns about free-roaming pets including cats: compromised animal welfare due to risks and neglect; the need for more responsible pet ownership and owner education; calls for stricter regulations and enforcement, including mandatory microchipping and desexing, and regulating cats similarly to dogs; the negative influence of social media; the importance of desexing to control populations and improve behaviour; increased risks to the roaming animals themselves, other animals, humans, and the environment; nuisance behaviours; and differing opinions on whether roaming cats or dogs are more of an issue. Conclusion: The findings align with previous research indicating a growing but inconsistent public awareness of animal welfare and environmental impacts associated with free-roaming cats. They highlight the need for education and targeted policy to address inconsistencies in attitudes and promote responsible cat ownership. Clinical relevance: Addressing these issues through enhanced public education and policy measures will help to balance animal welfare with community safety and environmental protection.Item An explorative analysis of gameplay data based on a serious game of climate adaptation in Aotearoa New Zealand(Elsevier B.V., 2025-08-27) Yang W; Harrison S; Blackett P; Allison ASerious games play a crucial role in educating and engaging the public on environmental management issues, such as climate change. These games also generate valuable data that can be used in understanding players' climate change decisions. However, there is a notable gap in the literature on serious game analytics to address the significance of scrutinising the usefulness of utilising gameplay data to explore player behaviours. This paper explores this gap through descriptive and quantitative analysis of gameplay data from ‘The Township Flooding Challenge’ in Aotearoa New Zealand to obtain data insights and data gaps in understanding players' behaviours and decisions on climate change adaptation. The findings suggest that gameplay data can offer insights into players' decisions on climate change adaptations amid uncertainty, but also highlights data gaps such as unclear definitions and incomplete data. Leveraging gameplay data can aid in data collection, decision-making modelling, and improving serious game design.Item Oral and Faecal Viromes of New Zealand Calves on Pasture With an Idiopathic Ill-Thrift Syndrome(John Wiley and Sons Ltd, 2025-07-28) Grimwood RM; Darnley JA; O’Connell JP; Hunt H; Taylor HS; Lawrence KE; Abbott MBW; Jauregui R; Geoghegan JL; Zhai S-LSince 2015, an idiopathic ill-thrift syndrome featuring diarrhoea and, in some cases, gastrointestinal ulceration has been reported in weaned New Zealand dairy calves. Similar syndromes have been described in the British Isles and Australia, but investigations in New Zealand have yet to identify a specific cause. Notably, the viromes of affected calves remain understudied. We conducted metatranscriptomic analyses of oral and faecal viromes in 11 calves from a dairy farm in Taranaki, New Zealand, experiencing an outbreak of this syndrome. This included nine calves showing clinical signs. Our analysis identified 18 bovine-associated viruses across two DNA and three RNA viral families, including six novel species. Oral viromes were dominated by Pseudocowpox virus, which was detected in all calves with oral lesions. Faecal viromes were more diverse, featuring adenoviruses, caliciviruses, astroviruses and picornaviruses. Bovine bopivirus, from the Picornaviridae family and previously unreported in New Zealand, was significantly associated with calves showing oral lesions and diarrhoea, indicating a possible link to disease, though its role remains unclear. The diverse viral communities of the calves complicate the identification of a single causative agent. Importantly, no novel viruses were significantly associated with the syndrome, and the viromes closely resembled those found in cattle globally. These findings suggest the syndrome likely has a multifactorial origin involving nutritional, management and environmental factors rather than being driven primarily by known or novel viruses. Further, research across regions and seasons is recommended to clarify the role of viruses in idiopathic ill-thrift among New Zealand calves.Item The prevalence of damaged tails in beef cows, pregnant dairy heifers and weaned dairy calves(Taylor and Francis Group on behalf of the New Zealand Veterinary Association, 2025-07-09) Cuttance EL; Mason WA; Bryan MA; Laven RAAims: To determine the prevalence of tail deviations, trauma and shortening in weaned dairy calves, pregnant dairy heifers and beef cows on a selection of New Zealand farms, and to compare results to those recorded in lactating dairy cows. Methods: This was a cross-sectional observational study. For beef cows, 25 farms were randomly selected from two veterinary practices. For dairy heifers and calves, data were collected from farms (70 and 76, respectively) previously involved in a study of tail damage in lactating cows. All cattle were tail scored using a modification of the New Zealand Veterinary Association Scoring System. Tails were palpated and lesions recorded as deviated (non-linear deformity), shortened, or traumatic (all other lesions). Cows could have more than one lesion, but for the prevalence calculations, only the presence/absence of a particular lesion was assessed. Descriptive herd-level prevalence data were reported for all farms/cattle types. For dairy heifers, the prevalence of tail deviation was compared to that in adult cows on the same farm. Results: For beef cattle, median prevalence of any tail damage was 4.0% (min 0.0, max 37.5%), and for deviations + trauma, it was 2.0% (min 0.0, max 16.7%). For dairy heifers, equivalent figures were 1.7% (min 0.0, max 17.8%) and 1.3% (min 0.0, max 17.8%). In weaned calves, the median prevalence of any damage was 0% (min 0.0, max 11.6%): almost all damage (61/64 cases) was deviation. Farms with a heifer prevalence of deviations > 2% had a mean cow prevalence of deviations 3.65 (95% CI = 0.7–6.6)% higher than herds with heifer prevalence ≤ 2%, but this explained only 9% of the variation in log percentage cow prevalence. Conclusions and clinical relevance: In all groups, median prevalence of tail damage was low (and lower than reported in dairy cows), but individual farms had high levels of damage. Beef cows were more likely to have shortened or traumatised tails than dairy heifers/calves, perhaps from an increased prevalence of faecal tail rings. Limited association between the prevalence of tail deviations in heifers and lactating cows on the same farm, and generally lower levels of tail damage in heifers, do not support the hypothesis that tail damage in cows principally results from damage earlier in life. This study adds support to our hypothesis that poor handling/infrastructure are responsible for most tail damage in dairy cows.