Journal Articles
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Item Machine learning for predicting climate change impacts on Pseudopithomyces chartarum spore counts: a risk indicator of facial eczema(Taylor and Francis Group, 2025-11-09) Wada M; Sagarasaeranee O; Cogger N; Marshall J; Cuttance E; Macara G; Sood A; Vallee EAims To determine the importance of 11 climate variables on pasture spore count of Pseudopithomyces chartarum, a risk indicator of facial eczema (FE), and to forecast spore counts in New Zealand until 2100, using longitudinal P. chartarum pasture spore count data. Methods Between 2010 and 2017, spore counts (n = 6,975) were collected from 862 paddocks spread over 102 farms in the North Island of New Zealand. Historical and projected climate data were obtained from the National Institute of Water and Atmospheric Research. The spore count dataset was merged with climate data from corresponding locations, incorporating time lags of 1–53 weeks. Linear regression models were fitted for describing crude associations, while random forest models were fitted for determining variable importance and predicting future spore counts. Results Mixed-effect linear regression models explained up to 11% of the variance of log-transformed spore counts by a single lagged climate covariate. The best-fit random forest model had a testing accuracy of 80% in classifying low or high FE risk (> 20,000 spores) with an R2 value of 43%. The random forest models suggested time-dependent importance of soil temperature at 10 cm depth, solar radiation, potential evapotranspiration, vapour pressure, soil moisture and minimum temperature, while no or weak evidence of variable importance was found for maximum temperature, rainfall, mean sea level atmospheric pressure, relative humidity and wind speed. Over the next 80 years, our model predicted an increase in the seasonal mean spore counts in the study farms by a mean of 17% (min 6, max 30%) under the high-end greenhouse gas emission scenario (representative concentration pathways (RCP) 8.5). Every decade was associated with an increase in the probability of high-risk spore counts (> 20,000) by 14–22% for the moderate to high emission scenarios (RCP 4.5–8.5). The model indicated increased peak spore counts across most regions over the next 80 years. Specifically, the entire North Island and three districts in the South Island were projected to have high mean peak spore counts by 2100. Conclusions and clinical relevance These findings could be used to target high-risk areas to implement mitigation or adaptation measures for FE. In addition, the study highlights the value of ecological data for forecasting environmental disease risks to enhance preparedness for climate change.Item Greenhouse gas mitigation in pasture-based dairy production systems in New Zealand: A review of mitigation options and their interactions(Elsevier B.V., 2025-08) Kalehe Kankanamge E; Ramilan T; Tozer PR; de Klein C; Romera A; Pieralli SReducing greenhouse gas (GHG) emissions from dairy farming is crucial for mitigating climate change and enhancing the environmental credentials of New Zealand's dairy exports. This paper aims to explore potential GHG mitigation measures and their interactive effects when combined within New Zealand context, emphasising the practicality of these combinations, particularly focusing on recent studies of pasture-based dairy systems. The review assesses various mitigation options across animal, manure management, feed-based, soil-related, and system-related interventions and identifies immediately applicable mitigation options based on specific criteria. It also discusses the implementation costs, implications on emissions, and the combined effects of these options when applied as bundles in pasture-based systems using a combination matrix. It is indicated that mitigation options on New Zealand's dairy farms can yield diverse outcomes and costs based on farming characteristics. By analysing different combinations of short-listed, it was found that although most mitigation options are compatible, some may have a lower overall reduction potential because of interaction effects. Integrating lower N fertiliser use, low-emission feed, and reduced stocking rates with high-performing animals provides a practical approach for GHG reductions and potential cost savings. However, implementing compatible mitigation bundles requires better quantification of their interactions, economic viability, and compatibility with existing farming systems which need further research.Item Household food insecurity, nutrient intakes and BMI in New Zealand infants(Cambridge University Press on behalf of The Nutrition Society, 2025-11-03) Katiforis I; Smith C; Haszard JJ; Styles SE; Leong C; Fleming EA; Taylor RW; Conlon CA; Beck KL; Von Hurst PR; Te Morenga LA; Daniels L; Rowan M; Casale M; McLean NH; Cox AM; Jones EA; Brown KJ; Bruckner BR; Jupiterwala R; Wei A; Heath A-LMObjective: The first year of life is a critical period when nutrient intakes can affect long-term health outcomes. Although household food insecurity may result in inadequate nutrient intakes or a higher risk of obesity, no studies have comprehensively assessed nutrient intakes of infants from food insecure households. This study aimed to investigate how infant nutrient intakes and body mass index (BMI) differ by household food security. Design: Cross-sectional analysis of the First Foods New Zealand study of infants aged 7–10 months. Two 24-hour diet recalls assessed nutrient intakes. “Usual” intakes were calculated using the Multiple Source Method. BMI z-scores were calculated using World Health Organization Child Growth Standards. Setting: Dunedin and Auckland, New Zealand. Participants: Households with infants (n=604) classified as: severely food insecure, moderately food insecure, or food secure. Results: Nutrient intakes of food insecure and food secure infants were similar, aside from slightly higher free and added sugars intakes in food insecure infants. Energy intakes were adequate, and intakes of most nutrients investigated were likely to be adequate. Severely food insecure infants had a higher mean BMI z-score than food secure infants, although no significant differences in weight categories (underweight; healthy weight; overweight) were observed between groups. Conclusions: Household food insecurity, in the short term, does not appear to adversely impact the nutrient intakes and weight status of infants. However, mothers may be protecting their infants from potential nutritional impacts of food insecurity. Future research should investigate how food insecurity affects nutrient intakes of the entire household.Item Chemical and Biochemical Properties of Verjuice Obtained from Vitis labrusca Grapes by Using Different Extraction Methods(MDPI (Basel, Switzerland), 2025-10-28) Soares LDS; Sant’Anna V; Leães FL; Weber FH; Furlan JM; Clerici NJ; Brandelli A; Crepalde LT; Dupas de Matos A; Parsons JGVerjuice, a green grape juice traditionally produced from grapes obtained through thinning, represents a sustainable alternative for the utilization of viticulture by-products. No standardized methods of production are utilized to make verjuice, highlighting the need for further research. This study evaluated three extraction methods—pressing extraction (PE), steam extraction (SE), and centrifuge juicer extraction (CJE)—to produce verjuice from three Vitis labrusca varietals (Bordô, Concord, and White Niágara). Physicochemical parameters, volatile compounds (VOC), total polyphenol content, antioxidant and anti-hypertensive activities were analyzed. Extraction method and grape varietal influenced physicochemical composition, antioxidant capacity, and VOC. The SE method resulted in higher yields but lower polyphenolic content, while the CJE was more efficient in extracting phenolic compounds and preserving antioxidant properties. Higher concentrations of malic acid were observed in verjuice extracted by PE and CJE methods from Bordô and Concord grapes, while higher tartaric acid content was found in Bordô and Niágara grapes extracted by CJE. Within grapes, verjuices presented wider volatile profile than those described in the literature, and CJE and PE methods yielded higher amounts of VOC. Thus, V. labrusca presents great potential to produce verjuices and CJE shows to be an efficient alternative to the pressing method.Item Effect of Varying Dairy Cow Size and Live Weight on Soil Structure and Pasture Attributes(MDPI (Basel, Switzerland), 2025-10) Negrón M; López IF; Dörner J; Cartmill AD; Balocchi OA; Saldivia E; Bellocchi GGrazing systems’ production efficiency is a dynamic interaction between soil, pasture, livestock, and climate. The magnitude of the changes is related to the mechanical stress applied by the livestock and their feeding behaviour. In Southern Chile, dairy cattle present a high heterogeneity in breeds, size, live weight, and milk production. This study investigated whether cows of contrasting size/live weight can improve degraded pasture and positively modify soil (Andosol-Duric Hapludand) physical features. Three pasture types were used as follows: (i) cultivated fertilised Lolium perenne L. (perennial ryegrass) and Trifolium repens L. (white clover) mixture (BM); (ii) cultivated fertilised L. perenne, T. repens, Bromus valdivianus Phil. (pasture brome), Holcus lanatus L. (Yorkshire fog), and Dactylis glomerata L. (cocksfoot) mixture (MSM); and (iii) naturalised fertilised pasture Agrostis capillaris L. (browntop), B. valdivianus, and T. repens (NFP). Pastures were grazed with two groups of dairy cows of contrasting size and live weight: light cows (LC) [live weight: 464 ± 5.4 kg; height at the withers: 132 ± 0.6 cm (average ± s.e.m.)] and heavy cows (HC) [live weight: 600 ± 8.7 kg; height at the withers: 141 ± 0.9 cm (average ± s.e.m.)]. Hoof area was measured, and the pressure applied by cows on the soil was calculated. Soil differences in penetration resistance (PR) and macro-porosity (wCP > 50 μm) between pastures were explained by tillage and seeding, rather than as a result of livestock presence and movement (animal trampling). The PR variation during the year was associated with the soil water content (SWC). Grazing dairy cows of contrasting live weight caused changes in soil and pasture attributes, and they behaved differently during grazing. Light cows were linked to more intense grazing, a stable soil structure, and pastures with competitive species and greater tiller density. In MSM, pasture consumption increased, and the soil was more resilient to hoof compression. In general, grazing with heavy cows in these three different pasture systems did not negatively impact soil physical properties. These findings indicate that volcanic soils are resilient and that during renovation, the choice of pasture type has a greater initial impact on soil structure than the selection of cow size, but incorporating lighter cows can be a strategy to promote denser pasture swards in these grazing systems.Item Measuring Herbage Mass: A Review(MDPI (Basel, Switzerland), 2025-10-01) Susruthan V; Donaghy DJ; Kenyon PR; Sneddon NW; Cartmill AD; Bellocchi GThe accurate measurement of herbage mass is essential for feed budgeting and the management of sustainable and profitable grazing systems. There are many techniques available to estimate herbage mass in pastoral systems, and these vary in accuracy, cost, and time taken to implement. In situ and remote sensing techniques are both associated with moderate to high error, as herbage mass is affected by a number of dependent and independent factors, including sward composition, soil structure, chemical characteristics and moisture levels, climatic conditions, and grazing management, which must be considered in the development of an accurate local calibration model for precise estimation of herbage mass. This review provides an overview of commonly used herbage mass assessment techniques and describes their limitations, synergies, and trade-offs, and also covers the integration of new technologies which have the potential to monitor pastures at scale. This review highlights the need for further research and to integrate new technologies for accurate and precise measurement of herbage mass, noting the lack of calibration with in situ methods, the need for development of new protocols for assessment, variance in equipment and software compatibility, and the need to evaluate the effectiveness of methods/techniques on a variety of livestock operations for extended periods.Item Knowledge, Attitudes, and Practices of Smallholder Dairy Cattle Farmers in Tanzania: A Cross-Sectional Survey on Cattle Infertility(MDPI, Basel, Switzerland, 2025-10) Ngou A; Laven R; Parkinson T; Kashoma I; Donaghy DInfertility is one of the major farming constraints facing smallholder dairy cattle farming in Tanzania. Despite its impact, there is limited information on how farmers understand and manage it. The present study aimed to assess farmers’ knowledge, attitudes and practices related to dairy cattle infertility. A cross-sectional survey was conducted using a structured questionnaire involving 301 farmers across six major dairy-farming regions: Tanga, Arusha, Kilimanjaro, Mbeya, Morogoro and Njombe. Overall, 95% of respondents reported encountering infertility on their farms. Farmers were asked to identify signs of infertility from the list of 10 (8 correct and 2 distractors); the median score for correct identification was 7 (range 2–10). The most recognised sign was return to oestrus after insemination (94%). Most farmers correctly identified low milk yield and mastitis as not being signs of infertility. The main reported causes included poor nutrition/housing (93%), livestock diseases (89%), poor record keeping (85%), and poor oestrus detection (83%). Nearly all (98%) viewed infertility as a serious issue, predominantly naming repeat breeding (95%) and failure to produce a calf/year (90%). Management strategies included seeking veterinary services (94%), slaughter (69%), sell to other farmers (23%) and self-treatment (16%). Our findings highlight widespread awareness of infertility while pointing out gaps in management, which reinforces the need for improved farmer education and support services.Item Dietary Patterns and Diet Quality before and/or during Pregnancy and How These Affect Birth Outcomes: A Systematic Review and Meta-analysis(Elsevier Inc. on behalf of American Society for Nutrition, 2025-10) Salatas C; Bronnert A; Lawrence R; Alexander T; Wall C; Bloomfield FH; Lin LLimited consistent evidence exists on how diet quality before and during pregnancy influences preterm birth and low birthweight risk. This study aims to assess whether diet quality based on dietary patterns before and during pregnancy affects preterm birth and low birthweight risk. We systematically searched 3 electronic databases and 4 registries for randomized controlled trials (RCTs) and quasi-RCTs without restrictions on publication date or language until 22 November, 2024. Included RCTs evaluated dietary patterns to enhance diet quality before/during pregnancy compared with a usual diet or placebo. Results were synthesized using random-effects meta-analyses with risk ratios (RRs) and 95% confidence intervals. Study quality was assessed using the Cochrane Risk of Bias 1 tool, and certainty of evidence was evaluated with the Grading of Recommendations Assessment, Development and Evaluation approach. Twenty-nine RCTs (7367 participants) were included. Improved diet quality through dietary patterns providing the recommended macronutrient intake or high unsaturated fats before and during pregnancy reduced the incidence of low birthweight (<2500 g) (7 RCTs, 2178 participants, RR 0.53 [0.37, 0.77], low certainty of evidence) and have potential benefit for reducing preterm birth (15 RCTs, 4949 participants, RR 0.79 [0.62, 1.02], low certainty of evidence) compared with usual diet. The data available support interventions starting in the first trimester (RR 0.30 [0.11, 0.80]), lasting 4–7 mo (RR 0.52 [0.37, 0.73]), with similar effects in both high-/upper-middle-income [RR 0.44 (0.19, 10.04)] and lower-middle-income (RR 0.44 [0.31, 0.63]) populations, especially in low-risk women (RR 0.52 [0.37, 0.73]). Diets providing the recommended macronutrient intake or high in unsaturated fats significantly reduced risk of low birthweight when initiated in the first trimester and maintained for 4–7 mo, regardless of country-level socioeconomic context. Healthcare providers should consider recommending dietary patterns emphasizing whole foods and high-quality fats as part of early prenatal care.Item Valorization of Sacha Inchi press cake: Technological advances, market, and regulatory considerations for sustainable food applications(Elsevier B.V., 2025-12) Njoroge JW; Phonphimai P; Khatmorn P; Ketnawa S; Tonkla P; Vong V; Singh J; Kaur L; Donlao NSacha Inchi (Plukenetia volubilis L.) press cake (SP), the nutrient-dense by-product of oil extraction, is rich in high quality proteins, essential fatty acids, and bioactive compounds. However, its use remains constrained by processing, regulatory and market acceptance barriers. This review summarizes recent advances in processing strategies to improve SP's nutritional, functional, and sensory qualities. Physical treatments (dry/wet fractionation, steaming, autoclaving, roasting and extrusion) increase protein digestibility and solubility while reducing heat-stable antinutrients. Emerging methods, including high-pressure processing, high-pressure homogenization, ultrasonication, microwave treatment, electroconductivity (Ohmic/PEF), and cold plasma technologies enhance extractability and bioactivity while preserving sensitive compounds. Chemical and chemo-enzymatic approaches (e.g., alkaline soaking, cyclodextrin complexation) suppress flavor precursors, whereas enzymatic hydrolysis and fermentation improve bioactive peptide release, digestibility, and functionality. Functional additives (sweeteners, salts, polysaccharides, flavor enhancers) help mask bitterness, while paired with consumer-preferred flavors increase acceptance. Beyond processing, safety approvals (e.g., Thai FDA, EU novel food approval) and consumer perception on sensory, nutritional, and sustainability factors shape its market potential. Currently, SP shows potential across a wide range of food applications and its valorization supports sustainable protein supply chains. Future opportunities depend on integrating processing, safety, and regulatory strategies with consumer-driven innovation.Item The materialised temporality of dust: developing a biodesign methodology to spatialise time and temporalise space.(Cambridge University Press, 2025-01-27) Ramirez-Figueroa C; Nevin A; Orme CThe paper uses the material and conceptual figure of dust and matter out of place to amplify more-than-human perspectives of time, to trace the changing orientations and ethos of a site. Dust contains a complex mixture of inorganic and organic material, made up of an exuberance of microbial life such as Penicillium, Aspergillus and Cladosporium and around 20 other fungal sources. We are interested in dust as a material and metaphorical device to situate and critique temporality and the way we narrate and investigate the past and future, from a non-human, microbial point of view. Dust implies residual matter, a contradiction to order often associated with dirt. It indicates something that needs to be removed, or rearranged, something that is “out of place,” an element that does not fit. Dust also indicates time and space and signals movement and life: dust hosts a medley of non-human particles and microbial communities that engage in their own worldmaking practices. The paper brings together methods of “un-cleaning” with archival research and spatial methods of 3D scanning, modelling and mapping, as an opportunity to decentre human hubris and explore the ways in which non-humans have and continue to inhabit “our” spaces.
