Journal Articles

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    Pattern Formation in a Spatially Extended Model of Pacemaker Dynamics in Smooth Muscle Cells.
    (Springer Nature Switzerland AG on behalf of the Society for Mathematical Biology, 2022-07-08) Fatoyinbo HO; Brown RG; Simpson DJW; van Brunt B
    Spatiotemporal patterns are common in biological systems. For electrically coupled cells, previous studies of pattern formation have mainly used applied current as the primary bifurcation parameter. The purpose of this paper is to show that applied current is not needed to generate spatiotemporal patterns for smooth muscle cells. The patterns can be generated solely by external mechanical stimulation (transmural pressure). To do this we study a reaction-diffusion system involving the Morris-Lecar equations and observe a wide range of spatiotemporal patterns for different values of the model parameters. Some aspects of these patterns are explained via a bifurcation analysis of the system without coupling - in particular Type I and Type II excitability both occur. We show the patterns are not due to a Turing instability and that the spatially extended model exhibits spatiotemporal chaos. We also use travelling wave coordinates to analyse travelling waves.
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    Soil C, N, and P stocks evaluation under major land uses on China’s Loess Plateau
    (Society for Range Management, 1/03/2017) Chen X; Hou F; Matthew C; He XZ
    Loess Plateau covers 640 000 km2 in the central northern China. Despite a semiarid environment, harsh winters, and hot summers, agriculture has been practiced in this region for > 5 000 yr, and the food production systems are among China's oldest. The environment is fragile because the loessial soils are prone to erosion. Sound scientific information is therefore required to underpin future land use planning in the region. To this end, total soil organic carbon (SOC), N, and P stocks were measured in Huanxian County of the wider Loess Plateau, representing five major land use categories. Sites were sampled three times over 3 yr. In all, almost 2 800 soil analyses were performed. A feature of these soils is low SOC content in the A horizon but comparatively small decline with soil depth. For example, SOC levels for the 0-20 cm and 70-100 cmsoil depths averaged 6.1 and 4.1Mg ha-1, respectively. Alfalfa and rangeland sites had 5.1 Mg ha-1 (10%) more total than cropland and 7.5 t ha-1 (16%) more total SOC to 100-cm soil depth than the two silvopastoral sites. For total soil N (0- to 100-cm soil depth) the averages of alfalfa and RL siteswere 20% and 28%, respectively, higher than the cropland and silvopastoral site group means, although soil C, N, and P levels are very low, relative to those of typical soils elsewhere. When these observations are scaled up to a regional level, it can be calculated that a 5% shift in land use from cropping or silvopastoral systems to alfalfa-based systems could increase soil C sequestration by as many as 20 million t CO2 per yr, although some caution is needed in making extrapolations, as the present data are from a single locality on the Loess Plateau.
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    Combined injection of rAAV with mannitol enhances gene expression in the rat brain
    (Cell Press, 6/09/2000) Mastakov M; Baer K; Xu R; Fitzsimons H; During M
    Recombinant adeno-associated viruses (rAAV) are highly efficient vectors for gene transfer into the central nervous system (CNS). However, a major hurdle for gene delivery to the mammalian brain is to achieve high-level transduction in target cells beyond the immediate injection site. Therefore, in addition to improvements in expression cassettes and viral titers, optimal injection parameters need to be defined. Here, we show that previous studies of somatic cell gene transfer to the mammalian brain have used suboptimal injection parameters, with even the lowest reported perfusion rates still excessively fast. Moreover, we evaluated the effect of local administration of mannitol to further enhance transgene expression and vector spread. Ultraslow microperfusion of rAAV, i.e., <33 nl/min, resulted in significantly higher gene expression and less injury of surrounding tissue than the previously reported rates of 100 nl/min or faster. Co-infusion of mannitol facilitated gene transfer to neurons, increasing both the total number and the distribution of transduced cells by 200-300%. Gene transfer studies in the CNS using rAAV should use very slow infusion rates and combined injection with mannitol to maximize transduction efficiency and spread.
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    Intra-molecular lysine-arginine derived advanced glycation end-product cross-linking in Type I collagen: A molecular dynamics simulation study.
    (2016-11) Collier TA; Nash A; Birch HL; de Leeuw NH
    Covalently cross-linked advanced glycation end products (AGE) are among the major post-translational modifications to proteins as a result of non-enzymatic glycation. The formation of AGEs has been shown to have adverse effects on the properties of the collagenous tissue; they are even linked to a number of age related disorders. Little is known about the sites at which these AGEs form or why certain sites within the collagen are energetically more favourable than others. In this study we have used a proven fully atomistic molecular dynamics approach to identify six sites where the formation of the intra-molecular 3-deoxyglucosone-derived imidazolium cross-link (DOGDIC) is energetically favourable. We have also conducted a comparison of these positions with those of the more abundant glucosepane cross-link, to determine any site preference. We show that when we consider both lysine and arginine AGEs, they exhibit a prevalence to form within the gap region of the collagen fibril.
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    Intake of milk and pasture and growth rate of calves reared by cows with high or low potential for milk production
    (CSIRO Publishing, 29/11/2016) Roca Fraga FJ; Lopez-Villalobos N; Martin NP; Kenyon PR; Morris ST; Hickson RE
    Milk production of cows influences calf weaning weight, which is the major driver for economic return in a cow–calf operation. The growth trajectory of 64 steer calves resulting from a terminal cross between Angus or Simmental bulls with Angus, Angus cross Holstein Friesian, Angus cross Jersey and Angus cross KiwiCross cows was examined during the pre-weaning period from birth (D0) to weaning (D148) and during the post-weaning period until a year of age (D365). Random regression models were used to model milk intake and liveweight of calves throughout lactation. These models were a good fit to the data (r2 = 0.77 for milk intake and r2 = 0.99 for liveweight). Total energy intake from milk was greater (P < 0.05) for the Angus cross Holstein Friesian-, Angus cross Jersey- and Angus cross KiwiCross-reared steers than for those reared by Angus dams. Additional milk intake increased liveweight of steers from D90 to D365, but the magnitude of the effect decreased as the calves aged. Simmental-sired steers had a greater liveweight response to additional milk intake than Angus-sired steers at D120 and D148, probably reflecting greater growth potential from out-crossed calves.
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    Data mining and influential analysis of gene expression data for plant resistance genes identification in tomato (Solanum lycopersicum)
    (Elsevier, 2014-03) Torres-Aviles F; Romeo JS; Lopez-Kleine L
    Background Molecular mechanisms of plant–pathogen interactions have been studied thoroughly but much about them is still unknown. A better understanding of these mechanisms and the detection of new resistance genes can improve crop production and food supply. Extracting this knowledge from available genomic data is a challenging task. Results Here, we evaluate the usefulness of clustering, data-mining and regression to identify potential new resistance genes. Three types of analyses were conducted separately over two conditions, tomatoes inoculated with Phytophthora infestans and not inoculated tomatoes. Predictions for 10 new resistance genes obtained by all applied methods were selected as being the most reliable and are therefore reported as potential resistance genes. Conclusion Application of different statistical analyses to detect potential resistance genes reliably has shown to conduct interesting results that improve knowledge on molecular mechanisms of plant resistance to pathogens.
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    An empirical analysis of the cost of rearing dairy heifers from birth to first calving and the time taken to repay these costs
    (Cambridge University Press, 8/02/2017) Boulton AC; Rushton J; Wathes DC
    Rearing quality dairy heifers is essential to maintain herds by replacing culled cows. Information on the key factors influencing the cost of rearing under different management systems is, however, limited and many farmers are unaware of their true costs. This study determined the cost of rearing heifers from birth to first calving in Great Britain including the cost of mortality, investigated the main factors influencing these costs across differing farming systems and estimated how long it took heifers to repay the cost of rearing on individual farms. Primary data on heifer management from birth to calving was collected through a survey of 101 dairy farms during 2013. Univariate followed by multivariable linear regression was used to analyse the influence of farm factors and key rearing events on costs. An Excel spreadsheet model was developed to determine the time it took for heifers to repay the rearing cost. The mean±SD ages at weaning, conception and calving were 62±13, 509±60 and 784±60 days. The mean total cost of rearing was £1819±387/heifer with a mean daily cost of £2.31±0.41. This included the opportunity cost of the heifer and the mean cost of mortality, which ranged from £103.49 to £146.19/surviving heifer. The multivariable model predicted an increase in mean cost of rearing of £2.87 for each extra day of age at first calving and a decrease in mean cost of £6.06 for each percentile increase in time spent at grass. The model also predicted a decrease in the mean cost of rearing in autumn and spring calving herds of £273.20 and £288.56, respectively, compared with that in all-year-round calving herds. Farms with herd sizes⩾100 had lower mean costs of between £301.75 and £407.83 compared with farms with <100 milking cows. The mean gross margin per heifer was £441.66±304.56 (range £367.63 to £1120.08), with 11 farms experiencing negative gross margins. Most farms repaid the cost of heifer rearing in the first two lactations (range 1 to 6 lactations) with a mean time from first calving until breaking even of 530±293 days. The results of the economic analysis suggest that management decisions on key reproduction events and grazing policy significantly influence the cost of rearing and the time it takes for heifers to start making a profit for the farm.
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    Branched pectic galactan in phloem-sieve-element cell walls: Implications for cell mechanics
    (American Society of Plant Biologists, 6/02/2018) Torode TA; O'Neill R; Marcus SE; Cornuault VRG; Pose S; Lauder RP; Kracun SK; Rydahl MG; Andersen MCF; Willats WGT; Braybrook SA; Townsend BJ; Clausen MH; Knox JP
    A major question in plant biology concerns the specification and functional differentiation of cell types. This is in the context of constraints imposed by networks of cell walls that both adhere cells and contribute to the form and function of developing organs. Here, we report the identification of a glycan epitope that is specific to phloem sieve element cell walls in several systems. A monoclonal antibody, designated LM26, binds to the cell wall of phloem sieve elements in stems of Arabidopsis (Arabidopsis thaliana), Miscanthus x giganteus, and notably sugar beet (Beta vulgaris) roots where phloem identification is an important factor for the study of phloem unloading of Suc. Using microarrays of synthetic oligosaccharides, the LM26 epitope has been identified as a β-1,6-galactosyl substitution of β-1,4-galactan requiring more than three backbone residues for optimized recognition. This branched galactan structure has previously been identified in garlic (Allium sativum) bulbs in which the LM26 epitope is widespread throughout most cell walls including those of phloem cells. Garlic bulb cell wall material has been used to confirm the association of the LM26 epitope with cell wall pectic rhamnogalacturonan-I polysaccharides. In the phloem tissues of grass stems, the LM26 epitope has a complementary pattern to that of the LM5 linear β-1,4-galactan epitope, which is detected only in companion cell walls. Mechanical probing of transverse sections of M x giganteus stems and leaves by atomic force microscopy indicates that phloem sieve element cell walls have a lower indentation modulus (indicative of higher elasticity) than companion cell walls.
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    Let the powers combine
    (Elsevier, 5/01/2016) Allison JR
    Lipoproteins play a variety of roles in bacterial physiology and virulence. Correct localization is essential for lipoprotein function, yet the mechanisms by which this occurs are not yet fully understood. In this issue of Structure, East et al. (2016) describe the factors that govern secretion of the PulA lipoprotein.
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    The aetiology of wobbly possum disease: Reproduction of the disease with purified nidovirus.
    (2016-04) Giles J; Perrott M; Roe W; Dunowska M
    The objective of this study was to investigate a role of a recently discovered marsupial nidovirus in the development of a neurological disease, termed wobbly possum disease (WPD), in the Australian brushtail possum (Trichosurus vulpecula). Four possums received 1 mL of a standard inoculum that had been prepared from tissues of WPD-affected possums, 4 possums received 1.8 mL (1 × 10(6) TCID50) of a cell lysate from inoculated cultures, and 4 possums received 1 mL (× 10(7) TCID50) of a purified WPD isolate. All but one possum that received infectious inocula developed neurological disease and histopathological lesions characteristic for WPD. High levels of viral RNA were detected in livers from all possums that received infectious inocula, but not from control possums. Altogether, our data provide strong experimental evidence for the causative involvement of WPD virus in development of a neurological disease in infected animals.